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The map label for this gene is trbI [H]

Identifier: 162146829

GI number: 162146829

Start: 1025592

End: 1026752

Strand: Reverse

Name: trbI [H]

Synonym: GDI_1011

Alternate gene names: 162146829

Gene position: 1026752-1025592 (Counterclockwise)

Preceding gene: 162146830

Following gene: 162146828

Centisome position: 26.03

GC content: 64.6

Gene sequence:

>1161_bases
GTGAGCGGGAGCACCGGAACGGGGGAGGCGGATAAACCAATGCCTCCCGTTAGGCCGCCGGGCGAGATGCGGTTGCGCGT
GACGCGACCGCCGGTCACGCGCCTGTCGCGCAAGGTGATCCTCGGCCTGTCGGTCGTCGCCGTCGCCGGCATCGGCGGTG
CGCTCTATCTGGCGTTGAAGCCGACGCCTCCGAAGAGCAATGCCGAACTCTATAATACTGGCAGCCGCACCACGCCGGAC
GGGCTGGCCAATCTGCCGGGGGACTATACCCATCCGCCGCGGCTCGGGGCGCCGCTCCCCGGTGATCTTGGTCGACCGCT
CCTCAAAGCAGGTGTTAGCGCTCCCGGCATGGCGACACCGGCGGCGCCTGCCGATCCGGAGAAACAGCGTATCGCCCAGG
AACAGGAAGCGGCGCGGGTCAGCCACCTGTTCACCCAGACGCAGATCGGTCGGGATATCGCAACGCCGACGACGGCGGGG
GCGACGGCAACCCAACCCGTCAGCGTTGCTACTGACCGCAAGCAGGCGTTCATTGATGGCCCGGTCGACCAGCGCACCGT
CAGCACCGCGCGTCTGACACCCGCTCCCAGCCCTTATGTGCTTCAGGCGGGATCGATCATTCCCGGTGCGCTGATTACCG
GCATCCGCTCTGCCCTGCCGGGCGAAGTCACGGCCCAGGTGACGGAGAATGTTTATGATTCTCCGACCGGGCATATTCTG
CTGATCCCGCAGGGGGCGACACTGATCGGTCGCTATGACTCCCAGATCGCTTATGGCCAGAAGCGGGTGCTGCTGGTCTG
GACCCGGCTGATGCGCAGTGGCGGGGATTCGATCGTGCTGGAGAACGAACCTGCCGCCGATGCGGCGGGCTACGCCGGAT
TGCAGGACCAGACCGACAATCATTGGGGCGAGGTATTCAAGGCCGCTCTGGTTTCGACCATCCTCAGTGTGGGTTCCGAA
GCGGATATCAGCGGCGGTAATGGCATTGCCCAAGCCCTGCGCACCGGTGGCTCGCAAGGTTTCAACCAGATCGGTGAGCA
GATGGTCGGACGGTCGCTGAATATCCAGCCGACCAACACAATCCGGCGTGGCTTTCCAGTGCGGGTCATGGTGCATCGTG
ACCTGGTTCTCTCCCCTTACGGAAAGGAGGCGTCTCGATGA

Upstream 100 bases:

>100_bases
GGATGATCGTCGATCGTCTGTTCGCCGCTGCCGAATTGCGGCTGGGGGCGAAGCACCAGCAGGTGGTGCGCATCGTCCGC
ACCGACGGGGCGCGGCGGTC

Downstream 100 bases:

>100_bases
CAAAACTCAGGCTGGGCCCTATTGAGAATGACAAACCGGTTCGGCTCACCGTGGAACTTCCCGCCGCCGTGCATCGCGAT
CTGATCGAATACGGGCGCCT

Product: conjugation TrbI-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MSGSTGTGEADKPMPPVRPPGEMRLRVTRPPVTRLSRKVILGLSVVAVAGIGGALYLALKPTPPKSNAELYNTGSRTTPD
GLANLPGDYTHPPRLGAPLPGDLGRPLLKAGVSAPGMATPAAPADPEKQRIAQEQEAARVSHLFTQTQIGRDIATPTTAG
ATATQPVSVATDRKQAFIDGPVDQRTVSTARLTPAPSPYVLQAGSIIPGALITGIRSALPGEVTAQVTENVYDSPTGHIL
LIPQGATLIGRYDSQIAYGQKRVLLVWTRLMRSGGDSIVLENEPAADAAGYAGLQDQTDNHWGEVFKAALVSTILSVGSE
ADISGGNGIAQALRTGGSQGFNQIGEQMVGRSLNIQPTNTIRRGFPVRVMVHRDLVLSPYGKEASR

Sequences:

>Translated_386_residues
MSGSTGTGEADKPMPPVRPPGEMRLRVTRPPVTRLSRKVILGLSVVAVAGIGGALYLALKPTPPKSNAELYNTGSRTTPD
GLANLPGDYTHPPRLGAPLPGDLGRPLLKAGVSAPGMATPAAPADPEKQRIAQEQEAARVSHLFTQTQIGRDIATPTTAG
ATATQPVSVATDRKQAFIDGPVDQRTVSTARLTPAPSPYVLQAGSIIPGALITGIRSALPGEVTAQVTENVYDSPTGHIL
LIPQGATLIGRYDSQIAYGQKRVLLVWTRLMRSGGDSIVLENEPAADAAGYAGLQDQTDNHWGEVFKAALVSTILSVGSE
ADISGGNGIAQALRTGGSQGFNQIGEQMVGRSLNIQPTNTIRRGFPVRVMVHRDLVLSPYGKEASR
>Mature_385_residues
SGSTGTGEADKPMPPVRPPGEMRLRVTRPPVTRLSRKVILGLSVVAVAGIGGALYLALKPTPPKSNAELYNTGSRTTPDG
LANLPGDYTHPPRLGAPLPGDLGRPLLKAGVSAPGMATPAAPADPEKQRIAQEQEAARVSHLFTQTQIGRDIATPTTAGA
TATQPVSVATDRKQAFIDGPVDQRTVSTARLTPAPSPYVLQAGSIIPGALITGIRSALPGEVTAQVTENVYDSPTGHILL
IPQGATLIGRYDSQIAYGQKRVLLVWTRLMRSGGDSIVLENEPAADAAGYAGLQDQTDNHWGEVFKAALVSTILSVGSEA
DISGGNGIAQALRTGGSQGFNQIGEQMVGRSLNIQPTNTIRRGFPVRVMVHRDLVLSPYGKEASR

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 40415; Mature: 40284

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSTGTGEADKPMPPVRPPGEMRLRVTRPPVTRLSRKVILGLSVVAVAGIGGALYLALK
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
PTPPKSNAELYNTGSRTTPDGLANLPGDYTHPPRLGAPLPGDLGRPLLKAGVSAPGMATP
CCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
AAPADPEKQRIAQEQEAARVSHLFTQTQIGRDIATPTTAGATATQPVSVATDRKQAFIDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCEEECCCCHHEECC
PVDQRTVSTARLTPAPSPYVLQAGSIIPGALITGIRSALPGEVTAQVTENVYDSPTGHIL
CCCCCCCCCEECCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEE
LIPQGATLIGRYDSQIAYGQKRVLLVWTRLMRSGGDSIVLENEPAADAAGYAGLQDQTDN
EEECCCEEEECCCCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHCCCCCCCCCCC
HWGEVFKAALVSTILSVGSEADISGGNGIAQALRTGGSQGFNQIGEQMVGRSLNIQPTNT
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHH
IRRGFPVRVMVHRDLVLSPYGKEASR
HHCCCCEEEEEECCEEECCCCCCCCC
>Mature Secondary Structure 
SGSTGTGEADKPMPPVRPPGEMRLRVTRPPVTRLSRKVILGLSVVAVAGIGGALYLALK
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
PTPPKSNAELYNTGSRTTPDGLANLPGDYTHPPRLGAPLPGDLGRPLLKAGVSAPGMATP
CCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
AAPADPEKQRIAQEQEAARVSHLFTQTQIGRDIATPTTAGATATQPVSVATDRKQAFIDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCEEECCCCHHEECC
PVDQRTVSTARLTPAPSPYVLQAGSIIPGALITGIRSALPGEVTAQVTENVYDSPTGHIL
CCCCCCCCCEECCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEE
LIPQGATLIGRYDSQIAYGQKRVLLVWTRLMRSGGDSIVLENEPAADAAGYAGLQDQTDN
EEECCCEEEECCCCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHCCCCCCCCCCC
HWGEVFKAALVSTILSVGSEADISGGNGIAQALRTGGSQGFNQIGEQMVGRSLNIQPTNT
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHH
IRRGFPVRVMVHRDLVLSPYGKEASR
HHCCCCEEEEEECCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]