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The map label for this gene is yabF [C]

Identifier: 162146824

GI number: 162146824

Start: 1021071

End: 1021862

Strand: Direct

Name: yabF [C]

Synonym: GDI_1006

Alternate gene names: 162146824

Gene position: 1021071-1021862 (Clockwise)

Preceding gene: 162146822

Following gene: 162146825

Centisome position: 25.89

GC content: 60.73

Gene sequence:

>792_bases
ATGAATGTTCTGATCGTCTTCGCTCATCCGGAAAGACACTCGCTCAACGGCGCCCTGCTTGACGTCGCCGTCTCTGAACT
GACGGCCCAGGGACATGACGTTCAGGTGTCGGATCTCTATGCCATGCACTGGAAGGCTGCAGTTGACAGGGACGATTTTC
CCGGCCTGTCGTCCGACGGACCGCTGAAAGTCTGGAAAGCGTCCAATGACGGGTTCGCGGCAGATGCGCTGACGCCGGAC
GTGAAGGCGGAACAAGAGAAATTGCTGTGGGCCGATACGGTCATTCTGCAGTTCCCGTTATGGTGGTTCGCCATGCCGGC
CATTCTCAAAGGCTGGGTGGACCGGGTCTATGCCTCCGGCTTCGCCTATGGGGTGGGCGAACACAGCGAGCAGCGCTGGG
GCGACCGGTATGGCGAAGGGGTCATGGCCGGCAAGCGCGCAATGCTGATGGTCACCGCAGGCGGGTGGCCCGAACATTAT
TCGGACCGCGGGATCAACGGCCCGATCGACGATCTGCTGTTCCCGATCAATCATGGGATCCTTTTCTATCCCGGCTTCAC
CGTTCTGCCGCCCTTCGTGGCCTATCGTGTCGATCGGATGGACGAGCCTAAATTCACGCTTCTCGCGGAACAATTGCGCG
AGCGGATGACGACCTTGGAAACGATCGCGCCGATTCCTTATCGCAAGCAGAATTACGGCGACTACCAGATCCCGACCATG
GAACTGCTGCCCGGACTGGCGCCCCCCGGAGCGCACGGCTTCGCGGTGCATCTTGCCCCCGAGCGCGACTGA

Upstream 100 bases:

>100_bases
TTTCAGCATTCTCCCTTCCGCCATCGCCATATGGGATAAGAATAGCCTATCGCGTAATCTCGTTGGGAAACGAAATTTTC
CACGCAATGAGAGTCCGCTC

Downstream 100 bases:

>100_bases
CCGCCGCGCCGCAATGAGGGAGGAGCGTCAGCGTCCGCAAATGTGCTCTGGAAGCGGTCATAAGCTGGACGCCGATTGAG
GATCGGCATTACTCATAGCC

Product: NAD(P)H oxidoreductase

Products: NAD+; NADP+; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNVLIVFAHPERHSLNGALLDVAVSELTAQGHDVQVSDLYAMHWKAAVDRDDFPGLSSDGPLKVWKASNDGFAADALTPD
VKAEQEKLLWADTVILQFPLWWFAMPAILKGWVDRVYASGFAYGVGEHSEQRWGDRYGEGVMAGKRAMLMVTAGGWPEHY
SDRGINGPIDDLLFPINHGILFYPGFTVLPPFVAYRVDRMDEPKFTLLAEQLRERMTTLETIAPIPYRKQNYGDYQIPTM
ELLPGLAPPGAHGFAVHLAPERD

Sequences:

>Translated_263_residues
MNVLIVFAHPERHSLNGALLDVAVSELTAQGHDVQVSDLYAMHWKAAVDRDDFPGLSSDGPLKVWKASNDGFAADALTPD
VKAEQEKLLWADTVILQFPLWWFAMPAILKGWVDRVYASGFAYGVGEHSEQRWGDRYGEGVMAGKRAMLMVTAGGWPEHY
SDRGINGPIDDLLFPINHGILFYPGFTVLPPFVAYRVDRMDEPKFTLLAEQLRERMTTLETIAPIPYRKQNYGDYQIPTM
ELLPGLAPPGAHGFAVHLAPERD
>Mature_263_residues
MNVLIVFAHPERHSLNGALLDVAVSELTAQGHDVQVSDLYAMHWKAAVDRDDFPGLSSDGPLKVWKASNDGFAADALTPD
VKAEQEKLLWADTVILQFPLWWFAMPAILKGWVDRVYASGFAYGVGEHSEQRWGDRYGEGVMAGKRAMLMVTAGGWPEHY
SDRGINGPIDDLLFPINHGILFYPGFTVLPPFVAYRVDRMDEPKFTLLAEQLRERMTTLETIAPIPYRKQNYGDYQIPTM
ELLPGLAPPGAHGFAVHLAPERD

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Homo sapiens, GI156564357, Length=226, Percent_Identity=39.8230088495575, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI4505415, Length=225, Percent_Identity=36.8888888888889, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI70995396, Length=121, Percent_Identity=45.4545454545455, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1786231, Length=137, Percent_Identity=30.6569343065693, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787129, Length=124, Percent_Identity=31.4516129032258, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789406, Length=230, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.2

Molecular weight: Translated: 29363; Mature: 29363

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLIVFAHPERHSLNGALLDVAVSELTAQGHDVQVSDLYAMHWKAAVDRDDFPGLSSDG
CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCC
PLKVWKASNDGFAADALTPDVKAEQEKLLWADTVILQFPLWWFAMPAILKGWVDRVYASG
CEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FAYGVGEHSEQRWGDRYGEGVMAGKRAMLMVTAGGWPEHYSDRGINGPIDDLLFPINHGI
CEECCCCCCHHHHHHHHCCCHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCE
LFYPGFTVLPPFVAYRVDRMDEPKFTLLAEQLRERMTTLETIAPIPYRKQNYGDYQIPTM
EEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
ELLPGLAPPGAHGFAVHLAPERD
HHCCCCCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MNVLIVFAHPERHSLNGALLDVAVSELTAQGHDVQVSDLYAMHWKAAVDRDDFPGLSSDG
CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCC
PLKVWKASNDGFAADALTPDVKAEQEKLLWADTVILQFPLWWFAMPAILKGWVDRVYASG
CEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FAYGVGEHSEQRWGDRYGEGVMAGKRAMLMVTAGGWPEHYSDRGINGPIDDLLFPINHGI
CEECCCCCCHHHHHHHHCCCHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCE
LFYPGFTVLPPFVAYRVDRMDEPKFTLLAEQLRERMTTLETIAPIPYRKQNYGDYQIPTM
EEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
ELLPGLAPPGAHGFAVHLAPERD
HHCCCCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; NADPH; H+; acceptor

Specific reaction: NAD(P)H + H+ + acceptor = NAD(P)+ + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]