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The map label for this gene is linR [H]

Identifier: 162146819

GI number: 162146819

Start: 1016972

End: 1017925

Strand: Direct

Name: linR [H]

Synonym: GDI_1001

Alternate gene names: 162146819

Gene position: 1016972-1017925 (Clockwise)

Preceding gene: 162146811

Following gene: 162146821

Centisome position: 25.78

GC content: 63.52

Gene sequence:

>954_bases
ATGGCACATGTGGCGCGCGGCTACGACCTCAATCTTCTTCAGGCGATGAACGTGCTGGTCGAGGAATCGAGCGTTACCGG
CGCGGCCGAGAGGCTGCACGTCAGTGCCGCGACCATGAGCCGCACCCTGTCCCGCCTGCGCGAGACGTTCCACGATGCCA
TTCTGGTGCAATCGGGTCGGCATATGGTGCCAACACCGCGTGCCCTGCAGATGCAGCCGCGTGTCAGCCAGATCCTCTCT
GCGATCAGCGATCTGTATCGTCCACGGCATGCCCTGGATTTCACCGGCCTGACGCCGACCTTCCGTATCCGGGCAGCCGA
CGTGGTGATTGGCCCATACGCGGAGGCGCTGCTGAGCGCCCTGCGCGCCGACTGTCCGGACACCACGCTGATCTTCACCG
CAGAATCGAACGGTGACGACAGCGATTTCCTGCGACAGGGCGGGATCGATCTCTATATCGGCGCCACCGCGCTCCTGCGG
CCCGAAATCATGCGCCAGACCCTGTTCGAGAGCCGCTTTCGCGGTGTGGTGCGGGCCGGTCATCCGATCCTGCTGGGAAA
GATCACACCGCAGGCGCTGGTAGCGTACCAGCACATCGCCGTCTCGCGCCGAGGGAGGCGACGGGGACCGATCGACGAGG
TCCTTGCCGATCAGTATGGGCTCGAACGCACTGTCGCGCTGCTGCTGACCTCTTTCTATGCCGCGCTGCAAGGGCTCGCA
CATACCGATCTGATCCTCCCGGCACCGGATATCCTGACTGACGCGGCAATGCTCGACCGGCTGGGTCTTTATGGCTTTCC
GCTACCGCTCGATCTGGAGCCGGTGACGATCTTCCAGGCCTGGCATCCCCGACACGACACTGACCAGGTCCATCAATGGC
TGCGACGCACGGTCCTACGTGTCATGAGCCCTCGCGCCCCGATCATAAAGCCAGAGACCGCTCAGGCTTTATGA

Upstream 100 bases:

>100_bases
GCGTTGGCTGAGGCGAAGACTGCTCGCGGCATATTCATCCTATGATTGGGTGTTTATTAGCCAATTCAGAGCCTGAGTCG
CATGACATAAGGAAGACCCG

Downstream 100 bases:

>100_bases
CGCTCCTGTGCCGCCCGCTTGCGAACGCCGCGAGCCGCGGCCGTGCCCGGAGACTTGCCGTCGGTAAAGGCCGCGATCAA
TGGCTGAAGGATAGCCCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MAHVARGYDLNLLQAMNVLVEESSVTGAAERLHVSAATMSRTLSRLRETFHDAILVQSGRHMVPTPRALQMQPRVSQILS
AISDLYRPRHALDFTGLTPTFRIRAADVVIGPYAEALLSALRADCPDTTLIFTAESNGDDSDFLRQGGIDLYIGATALLR
PEIMRQTLFESRFRGVVRAGHPILLGKITPQALVAYQHIAVSRRGRRRGPIDEVLADQYGLERTVALLLTSFYAALQGLA
HTDLILPAPDILTDAAMLDRLGLYGFPLPLDLEPVTIFQAWHPRHDTDQVHQWLRRTVLRVMSPRAPIIKPETAQAL

Sequences:

>Translated_317_residues
MAHVARGYDLNLLQAMNVLVEESSVTGAAERLHVSAATMSRTLSRLRETFHDAILVQSGRHMVPTPRALQMQPRVSQILS
AISDLYRPRHALDFTGLTPTFRIRAADVVIGPYAEALLSALRADCPDTTLIFTAESNGDDSDFLRQGGIDLYIGATALLR
PEIMRQTLFESRFRGVVRAGHPILLGKITPQALVAYQHIAVSRRGRRRGPIDEVLADQYGLERTVALLLTSFYAALQGLA
HTDLILPAPDILTDAAMLDRLGLYGFPLPLDLEPVTIFQAWHPRHDTDQVHQWLRRTVLRVMSPRAPIIKPETAQAL
>Mature_316_residues
AHVARGYDLNLLQAMNVLVEESSVTGAAERLHVSAATMSRTLSRLRETFHDAILVQSGRHMVPTPRALQMQPRVSQILSA
ISDLYRPRHALDFTGLTPTFRIRAADVVIGPYAEALLSALRADCPDTTLIFTAESNGDDSDFLRQGGIDLYIGATALLRP
EIMRQTLFESRFRGVVRAGHPILLGKITPQALVAYQHIAVSRRGRRRGPIDEVLADQYGLERTVALLLTSFYAALQGLAH
TDLILPAPDILTDAAMLDRLGLYGFPLPLDLEPVTIFQAWHPRHDTDQVHQWLRRTVLRVMSPRAPIIKPETAQAL

Specific function: Positively regulates the transcription of the linD and linE genes that are involved in gamma-hexachlorocyclohexane degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=301, Percent_Identity=24.9169435215947, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790147, Length=298, Percent_Identity=27.5167785234899, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35187; Mature: 35056

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHVARGYDLNLLQAMNVLVEESSVTGAAERLHVSAATMSRTLSRLRETFHDAILVQSGR
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HMVPTPRALQMQPRVSQILSAISDLYRPRHALDFTGLTPTFRIRAADVVIGPYAEALLSA
CCCCCCCHHCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEEEEECHHHHHHHHH
LRADCPDTTLIFTAESNGDDSDFLRQGGIDLYIGATALLRPEIMRQTLFESRFRGVVRAG
HHCCCCCCEEEEEECCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
HPILLGKITPQALVAYQHIAVSRRGRRRGPIDEVLADQYGLERTVALLLTSFYAALQGLA
CCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HTDLILPAPDILTDAAMLDRLGLYGFPLPLDLEPVTIFQAWHPRHDTDQVHQWLRRTVLR
HCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VMSPRAPIIKPETAQAL
HHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AHVARGYDLNLLQAMNVLVEESSVTGAAERLHVSAATMSRTLSRLRETFHDAILVQSGR
CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HMVPTPRALQMQPRVSQILSAISDLYRPRHALDFTGLTPTFRIRAADVVIGPYAEALLSA
CCCCCCCHHCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEEEEECHHHHHHHHH
LRADCPDTTLIFTAESNGDDSDFLRQGGIDLYIGATALLRPEIMRQTLFESRFRGVVRAG
HHCCCCCCEEEEEECCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
HPILLGKITPQALVAYQHIAVSRRGRRRGPIDEVLADQYGLERTVALLLTSFYAALQGLA
CCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HTDLILPAPDILTDAAMLDRLGLYGFPLPLDLEPVTIFQAWHPRHDTDQVHQWLRRTVLR
HCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VMSPRAPIIKPETAQAL
HHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11916699 [H]