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The map label for this gene is yrbD [C]

Identifier: 162146734

GI number: 162146734

Start: 926485

End: 927075

Strand: Direct

Name: yrbD [C]

Synonym: GDI_0912

Alternate gene names: 162146734

Gene position: 926485-927075 (Clockwise)

Preceding gene: 162146733

Following gene: 162146735

Centisome position: 23.49

GC content: 67.68

Gene sequence:

>591_bases
ATGGTCAGTGCGGTTCCAGTCAAAGGGGGCCGGAGTTCGGTCGAACTCGCCGCGGGATGCGCGGTGCTTGCCGTGCTGGG
CGGGTTGCTCGCCCTTGCGGTGGTCGACAAGGGGCACCGGCATGAGGACGGGTATCGTCTCAATGCCGCCTTCGCCCATA
TCGACGGGTTGTCCGTGGGCTCCGACGTTCGGCTGGCGGGCGTGACCGTCGGGCAGGTGGTCGCCGAACGGGTCGATCCG
TCCAGCTTCAAGGCCCAGGTGACGTTCACGGTCCGCCCCGATATTCACCTGCCGACCGACAGCGCCGCCATCATCACCAG
CGACAGCCTGCTGGGCGGGAAGTACATCGCCCTGTCGCCGGGCGGGAACGACGCCACGCTGCACCCGGGGGCGGCGATCG
CCGAGACGCAGGGATCGATCAGCCTGGAACAATTGCTCAGCCGCTTCATCTTCTCGGTGACCGATTCCATGACGCGGAAC
AATCAGCAGAAGGCGAATGCCCAGGGTACCGGTACCCAGGGTGCGCCCCAGGCAACCGGTCCGGGCAGTGCGCCGGCGGG
GGGGCATGGCGGCGGGGACGATCTGCCATGA

Upstream 100 bases:

>100_bases
GAATCGACCAGCGATTATGAGGCGTGGTTTCCCGAAGGGTGAATCGGCGGACGTAACCTGTTAAGGTCTGCCCGCCGTAG
TATTAGGGAAACGATGTCAT

Downstream 100 bases:

>100_bases
ACGCCACGGATGTGAATGACGAGGTGCAAAAGGACGGGGCCCTGCCCGCGCCGCCCGCGATCTGGCGCCAGTCCGACGGC
AGCCCGGTTTCCTGTCAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MVSAVPVKGGRSSVELAAGCAVLAVLGGLLALAVVDKGHRHEDGYRLNAAFAHIDGLSVGSDVRLAGVTVGQVVAERVDP
SSFKAQVTFTVRPDIHLPTDSAAIITSDSLLGGKYIALSPGGNDATLHPGAAIAETQGSISLEQLLSRFIFSVTDSMTRN
NQQKANAQGTGTQGAPQATGPGSAPAGGHGGGDDLP

Sequences:

>Translated_196_residues
MVSAVPVKGGRSSVELAAGCAVLAVLGGLLALAVVDKGHRHEDGYRLNAAFAHIDGLSVGSDVRLAGVTVGQVVAERVDP
SSFKAQVTFTVRPDIHLPTDSAAIITSDSLLGGKYIALSPGGNDATLHPGAAIAETQGSISLEQLLSRFIFSVTDSMTRN
NQQKANAQGTGTQGAPQATGPGSAPAGGHGGGDDLP
>Mature_196_residues
MVSAVPVKGGRSSVELAAGCAVLAVLGGLLALAVVDKGHRHEDGYRLNAAFAHIDGLSVGSDVRLAGVTVGQVVAERVDP
SSFKAQVTFTVRPDIHLPTDSAAIITSDSLLGGKYIALSPGGNDATLHPGAAIAETQGSISLEQLLSRFIFSVTDSMTRN
NQQKANAQGTGTQGAPQATGPGSAPAGGHGGGDDLP

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=118, Percent_Identity=34.7457627118644, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 19689; Mature: 19689

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSAVPVKGGRSSVELAAGCAVLAVLGGLLALAVVDKGHRHEDGYRLNAAFAHIDGLSVG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCC
SDVRLAGVTVGQVVAERVDPSSFKAQVTFTVRPDIHLPTDSAAIITSDSLLGGKYIALSP
CCEEEECCHHHHHHHHHCCCCCEEEEEEEEECCCEECCCCCEEEEECCCCCCCEEEEECC
GGNDATLHPGAAIAETQGSISLEQLLSRFIFSVTDSMTRNNQQKANAQGTGTQGAPQATG
CCCCCEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCC
PGSAPAGGHGGGDDLP
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVSAVPVKGGRSSVELAAGCAVLAVLGGLLALAVVDKGHRHEDGYRLNAAFAHIDGLSVG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCC
SDVRLAGVTVGQVVAERVDPSSFKAQVTFTVRPDIHLPTDSAAIITSDSLLGGKYIALSP
CCEEEECCHHHHHHHHHCCCCCEEEEEEEEECCCEECCCCCEEEEECCCCCCCEEEEECC
GGNDATLHPGAAIAETQGSISLEQLLSRFIFSVTDSMTRNNQQKANAQGTGTQGAPQATG
CCCCCEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCC
PGSAPAGGHGGGDDLP
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]