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The map label for this gene is ybiO [H]

Identifier: 162146614

GI number: 162146614

Start: 807612

End: 810131

Strand: Reverse

Name: ybiO [H]

Synonym: GDI_0792

Alternate gene names: 162146614

Gene position: 810131-807612 (Counterclockwise)

Preceding gene: 162146615

Following gene: 162146613

Centisome position: 20.54

GC content: 68.21

Gene sequence:

>2520_bases
ATGCCGGTTTTTTCCGTCCGTCGCGATCCGCGGCGGGGCCTATCCTATGTGGCGATTCTGGTCCTGGCGCTGCTGGCCGG
GGCAACGCCCGCGATCCGGCCGGCCCAGGCGGCCGACGCCGCGCCGGCCACCCAATCCTCCGCCCAGGCCCCCATGACCG
CCGATCAGGCGCAGCAGGTCCTGGGGGTACTGAACGATCCGCACAAGCGCGAGGAGTTCACCCGCACCCTGACGGCCATC
GCCAGGGGCCTGCCCCAGGCAGCCCCGGTTCCGGCCCGGGCTTCGGCGCCTGCCGCCGCACCCGCGCCGGCCGCGGGCAA
TGCGGACGTGGCGCTGGAGCCCAACAGCCTGGGCAGCGACGTCATGTCCGAACTGGCGGGCGTGCGCGACGTGACGCTGC
ACCAGGCGCGTGAATTCATCGGCCTGTTTTCCGACCTGGTCTTCGTCGGGCACTGGATCCATTCCGAACTGTCCAGCCCG
CAATCGCGCCAGACCCTGTTCGACGCGTTCGGACGCGCCGGGCTGATCTTCATCCTGGCGCTGGCGGCCGAGCGGGGCCT
GGCCATCGCGCTGCGCCGGCCGCTGAGCGCCGTGACCGCCCGCGCCGTCGAAGCCGAGCGGCAACTGAATCGCAGCGCGG
AGCAGGAAACGGCGGAAGCCGCCATGCCGGCCCCGGAGACGGAGGCCGAGCAGGCGGTCCAGGACACCCGCCGGCAGGAC
GTCCGCAAGCAGGTCGAAACGCTGCGCATCATCCGCCGCATTCCGTATTCGCTGCTGCATCTGCTGACACAAGCTGCTGC
CCGTGGCCCTGTTCCTGGGGATCGGCTACGCCGGGGCGGCGTTCGTCGGCGACGGCGAGGTCACGGAACTGGTCACGCTG
ACCCTGACCAACGCCTATGTCGCGGCGCGGGCAGATGTATCTGGTGGTCGAGATGGATCATGGTGCCGAAATCGCCGACC
ATCCGGCTGTGCGGGGCATCGGACCGGACGGCGCGGATCGTGACGCGCTGGTGGAACGTGCTGGTGGCCGTGCCGTCCAT
CGTCGTCTGCCTGTCGTCGCTGGGCGCGCTGTTCCACCTGGCCCCGCGCGGGACCGAGGCCCTGATCCGCGCCATCGTGC
TGGCCGAGCACGTGATGATCGCGGTGTTCATCTGGCGCATCCGCAAGCCCGTCGCCATGGCCATGCAGCCGCCGGCCCGC
TTCCGGGGCCGCTCGTTCTGGAGCTTCGTCGGCCATCTGGCGCATTTCTGGTGGCTGCCGGCGATGGTGTTCGACCTGGC
GCTGTGGCTGGTCTGGGCGATGCATGTGCGCGGTGGATACACGTGGATCTGGCGCACCACGATCCTGACCATCGTCGTCA
TCCTGCTGTCGCGCGTGCTGTCGCTGCTGGCGTTCGGCCTGCAGAACAGGGTCTTTCATGTCAGCGACGAGTTCGAGGCC
CGCTATCCCGGGCTGCAGGCGCGGGCGGATTATTATTATCCCTATGCGCGGCGCGGGCTGTCGATCCTGCTGGTCTTCGC
CACCCTGGTCATCCTGCTGCAGGCGTGGGGCATCCCGGCGGTCGCCTTCTTCCTGTACGGCGCGCTGGGCACGCAGATCA
TGACGGCGCTGGTGTCGATCATCATCGCCTTCACCATCGCGATCGCGGTGTGGGAAATCGCGAATGCCGCGTTGCAGAAC
CAGATCGCCCGCTACGAGACCACCGAGCAGGCATCCCGCGCCATCCGGCTGCGCACGGTGCTGCCGATCATCCGCACCGT
GCTGCTCAGCGTCATCATCATCATCGTCGCGGTCACGACCCTGTCGCAGATCGGCCTGAACGTGGCGCCGCTGCTGACCG
GCGCGGGTATCATGGGCGCCGCCATCGCCTTCGGGTCGCAAAGCCTGGTGAAGGATTTCATCACCGGATTCTTCATGCTG
GTGGAAAACGCCATGCAGGTCGGCGACTGGGTCACGGCGGGCGGCATTTCGGGCACGGTCGAGCATCTGTCGATCCGCAC
GCTGCGCCTGCGCACCACGTCGGGCGACGTGCATATCATTCCGTTCTCGTCCGTGACCTCGATCGCCAACACGTCGCGCG
ACTATAACGTCGTGGTCGTGACCTTCATGCTGGATCTGAGCGAGGACCCCGACCGGGTCGCCGCCATCCTGGCCGACGTG
GTGGCCGGCATGCGGGCCGACCCGCAGTTCGCACCCATGATCCTGACGGATTTCGCCTTCCTGGGCGTGGAGAAGGCCGA
CGGCGACGGGGCGAAGCTGGTGGGATCGTTCCGCACCACGGCGGGCAACAAATGGAAGGTGTCGCGCGAATATTATCGGC
GCCTGGGGCTGCGCATGGTCGCGGAAGGGGTGAAATTCCCCAGCCCCACCGCCATTTCCCTGCTGGGCAACACCGGCGGA
GCGCCGTTGCGCATCCAGATGGTGACGCCCCCGGCGGCGGCGAACAGCAATACCCAGCCCCCGACCGACGCTCCGCCGCG
CGTCCCGGGGGGCGTTCCTCATCCGGACACATCGCAATGA

Upstream 100 bases:

>100_bases
CGCGCATGACCCGGGGTGTCCCCGGGACCGTCCCCGGGGTATCGTCACGCTTCGCCGTCCGCCGTGGGCCGTGCGGAGCA
GCAGGAGGTATCGAACAGGC

Downstream 100 bases:

>100_bases
CCGACGATCACACACCGGCCGGCCTGACCGGCCTTGAGGAACCCCTGCGGACCGACGGCTTCGCCTTCCTGCGCGCGGCC
ACGACCCGGGCGATGCTGGA

Product: mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 839; Mature: 838

Protein sequence:

>839_residues
MPVFSVRRDPRRGLSYVAILVLALLAGATPAIRPAQAADAAPATQSSAQAPMTADQAQQVLGVLNDPHKREEFTRTLTAI
ARGLPQAAPVPARASAPAAAPAPAAGNADVALEPNSLGSDVMSELAGVRDVTLHQAREFIGLFSDLVFVGHWIHSELSSP
QSRQTLFDAFGRAGLIFILALAAERGLAIALRRPLSAVTARAVEAERQLNRSAEQETAEAAMPAPETEAEQAVQDTRRQD
VRKQVETLRIIRRIPYSLLHLLTQAAARGPVPGDRLRRGGVRRRRRGHGTGHADPDQRLCRGAGRCIWWSRWIMVPKSPT
IRLCGASDRTARIVTRWWNVLVAVPSIVVCLSSLGALFHLAPRGTEALIRAIVLAEHVMIAVFIWRIRKPVAMAMQPPAR
FRGRSFWSFVGHLAHFWWLPAMVFDLALWLVWAMHVRGGYTWIWRTTILTIVVILLSRVLSLLAFGLQNRVFHVSDEFEA
RYPGLQARADYYYPYARRGLSILLVFATLVILLQAWGIPAVAFFLYGALGTQIMTALVSIIIAFTIAIAVWEIANAALQN
QIARYETTEQASRAIRLRTVLPIIRTVLLSVIIIIVAVTTLSQIGLNVAPLLTGAGIMGAAIAFGSQSLVKDFITGFFML
VENAMQVGDWVTAGGISGTVEHLSIRTLRLRTTSGDVHIIPFSSVTSIANTSRDYNVVVVTFMLDLSEDPDRVAAILADV
VAGMRADPQFAPMILTDFAFLGVEKADGDGAKLVGSFRTTAGNKWKVSREYYRRLGLRMVAEGVKFPSPTAISLLGNTGG
APLRIQMVTPPAAANSNTQPPTDAPPRVPGGVPHPDTSQ

Sequences:

>Translated_839_residues
MPVFSVRRDPRRGLSYVAILVLALLAGATPAIRPAQAADAAPATQSSAQAPMTADQAQQVLGVLNDPHKREEFTRTLTAI
ARGLPQAAPVPARASAPAAAPAPAAGNADVALEPNSLGSDVMSELAGVRDVTLHQAREFIGLFSDLVFVGHWIHSELSSP
QSRQTLFDAFGRAGLIFILALAAERGLAIALRRPLSAVTARAVEAERQLNRSAEQETAEAAMPAPETEAEQAVQDTRRQD
VRKQVETLRIIRRIPYSLLHLLTQAAARGPVPGDRLRRGGVRRRRRGHGTGHADPDQRLCRGAGRCIWWSRWIMVPKSPT
IRLCGASDRTARIVTRWWNVLVAVPSIVVCLSSLGALFHLAPRGTEALIRAIVLAEHVMIAVFIWRIRKPVAMAMQPPAR
FRGRSFWSFVGHLAHFWWLPAMVFDLALWLVWAMHVRGGYTWIWRTTILTIVVILLSRVLSLLAFGLQNRVFHVSDEFEA
RYPGLQARADYYYPYARRGLSILLVFATLVILLQAWGIPAVAFFLYGALGTQIMTALVSIIIAFTIAIAVWEIANAALQN
QIARYETTEQASRAIRLRTVLPIIRTVLLSVIIIIVAVTTLSQIGLNVAPLLTGAGIMGAAIAFGSQSLVKDFITGFFML
VENAMQVGDWVTAGGISGTVEHLSIRTLRLRTTSGDVHIIPFSSVTSIANTSRDYNVVVVTFMLDLSEDPDRVAAILADV
VAGMRADPQFAPMILTDFAFLGVEKADGDGAKLVGSFRTTAGNKWKVSREYYRRLGLRMVAEGVKFPSPTAISLLGNTGG
APLRIQMVTPPAAANSNTQPPTDAPPRVPGGVPHPDTSQ
>Mature_838_residues
PVFSVRRDPRRGLSYVAILVLALLAGATPAIRPAQAADAAPATQSSAQAPMTADQAQQVLGVLNDPHKREEFTRTLTAIA
RGLPQAAPVPARASAPAAAPAPAAGNADVALEPNSLGSDVMSELAGVRDVTLHQAREFIGLFSDLVFVGHWIHSELSSPQ
SRQTLFDAFGRAGLIFILALAAERGLAIALRRPLSAVTARAVEAERQLNRSAEQETAEAAMPAPETEAEQAVQDTRRQDV
RKQVETLRIIRRIPYSLLHLLTQAAARGPVPGDRLRRGGVRRRRRGHGTGHADPDQRLCRGAGRCIWWSRWIMVPKSPTI
RLCGASDRTARIVTRWWNVLVAVPSIVVCLSSLGALFHLAPRGTEALIRAIVLAEHVMIAVFIWRIRKPVAMAMQPPARF
RGRSFWSFVGHLAHFWWLPAMVFDLALWLVWAMHVRGGYTWIWRTTILTIVVILLSRVLSLLAFGLQNRVFHVSDEFEAR
YPGLQARADYYYPYARRGLSILLVFATLVILLQAWGIPAVAFFLYGALGTQIMTALVSIIIAFTIAIAVWEIANAALQNQ
IARYETTEQASRAIRLRTVLPIIRTVLLSVIIIIVAVTTLSQIGLNVAPLLTGAGIMGAAIAFGSQSLVKDFITGFFMLV
ENAMQVGDWVTAGGISGTVEHLSIRTLRLRTTSGDVHIIPFSSVTSIANTSRDYNVVVVTFMLDLSEDPDRVAAILADVV
AGMRADPQFAPMILTDFAFLGVEKADGDGAKLVGSFRTTAGNKWKVSREYYRRLGLRMVAEGVKFPSPTAISLLGNTGGA
PLRIQMVTPPAAANSNTQPPTDAPPRVPGGVPHPDTSQ

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=491, Percent_Identity=28.9205702647658, Blast_Score=158, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 91246; Mature: 91115

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVFSVRRDPRRGLSYVAILVLALLAGATPAIRPAQAADAAPATQSSAQAPMTADQAQQV
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHH
LGVLNDPHKREEFTRTLTAIARGLPQAAPVPARASAPAAAPAPAAGNADVALEPNSLGSD
HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHH
VMSELAGVRDVTLHQAREFIGLFSDLVFVGHWIHSELSSPQSRQTLFDAFGRAGLIFILA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH
LAAERGLAIALRRPLSAVTARAVEAERQLNRSAEQETAEAAMPAPETEAEQAVQDTRRQD
HHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
VRKQVETLRIIRRIPYSLLHLLTQAAARGPVPGDRLRRGGVRRRRRGHGTGHADPDQRLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHH
RGAGRCIWWSRWIMVPKSPTIRLCGASDRTARIVTRWWNVLVAVPSIVVCLSSLGALFHL
HHCCCEEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
APRGTEALIRAIVLAEHVMIAVFIWRIRKPVAMAMQPPARFRGRSFWSFVGHLAHFWWLP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
AMVFDLALWLVWAMHVRGGYTWIWRTTILTIVVILLSRVLSLLAFGLQNRVFHVSDEFEA
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHH
RYPGLQARADYYYPYARRGLSILLVFATLVILLQAWGIPAVAFFLYGALGTQIMTALVSI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IIAFTIAIAVWEIANAALQNQIARYETTEQASRAIRLRTVLPIIRTVLLSVIIIIVAVTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQIGLNVAPLLTGAGIMGAAIAFGSQSLVKDFITGFFMLVENAMQVGDWVTAGGISGTV
HHHHCCCHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
EHLSIRTLRLRTTSGDVHIIPFSSVTSIANTSRDYNVVVVTFMLDLSEDPDRVAAILADV
HHHEEEEEEEEECCCCEEEEECHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHH
VAGMRADPQFAPMILTDFAFLGVEKADGDGAKLVGSFRTTAGNKWKVSREYYRRLGLRMV
HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECHHHHHHHHHHHH
AEGVKFPSPTAISLLGNTGGAPLRIQMVTPPAAANSNTQPPTDAPPRVPGGVPHPDTSQ
HHCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PVFSVRRDPRRGLSYVAILVLALLAGATPAIRPAQAADAAPATQSSAQAPMTADQAQQV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHH
LGVLNDPHKREEFTRTLTAIARGLPQAAPVPARASAPAAAPAPAAGNADVALEPNSLGSD
HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHH
VMSELAGVRDVTLHQAREFIGLFSDLVFVGHWIHSELSSPQSRQTLFDAFGRAGLIFILA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH
LAAERGLAIALRRPLSAVTARAVEAERQLNRSAEQETAEAAMPAPETEAEQAVQDTRRQD
HHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
VRKQVETLRIIRRIPYSLLHLLTQAAARGPVPGDRLRRGGVRRRRRGHGTGHADPDQRLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHH
RGAGRCIWWSRWIMVPKSPTIRLCGASDRTARIVTRWWNVLVAVPSIVVCLSSLGALFHL
HHCCCEEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
APRGTEALIRAIVLAEHVMIAVFIWRIRKPVAMAMQPPARFRGRSFWSFVGHLAHFWWLP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
AMVFDLALWLVWAMHVRGGYTWIWRTTILTIVVILLSRVLSLLAFGLQNRVFHVSDEFEA
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHH
RYPGLQARADYYYPYARRGLSILLVFATLVILLQAWGIPAVAFFLYGALGTQIMTALVSI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IIAFTIAIAVWEIANAALQNQIARYETTEQASRAIRLRTVLPIIRTVLLSVIIIIVAVTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQIGLNVAPLLTGAGIMGAAIAFGSQSLVKDFITGFFMLVENAMQVGDWVTAGGISGTV
HHHHCCCHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
EHLSIRTLRLRTTSGDVHIIPFSSVTSIANTSRDYNVVVVTFMLDLSEDPDRVAAILADV
HHHEEEEEEEEECCCCEEEEECHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHH
VAGMRADPQFAPMILTDFAFLGVEKADGDGAKLVGSFRTTAGNKWKVSREYYRRLGLRMV
HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECHHHHHHHHHHHH
AEGVKFPSPTAISLLGNTGGAPLRIQMVTPPAAANSNTQPPTDAPPRVPGGVPHPDTSQ
HHCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]