Click here to switch to the map view.

The map label for this gene is cdaR [H]

Identifier: 162146447

GI number: 162146447

Start: 632092

End: 633318

Strand: Reverse

Name: cdaR [H]

Synonym: GDI_0623

Alternate gene names: 162146447

Gene position: 633318-632092 (Counterclockwise)

Preceding gene: 162146450

Following gene: 162146445

Centisome position: 16.06

GC content: 73.84

Gene sequence:

>1227_bases
GTGGATGACGGAGCGCACGAGACCATGCCGAGCGTGGCGATCGATCCGGCCCTGGCACAGGCGATCGTAGACCGGTCGAT
GACCGTCATTGCCTGCAACATCAACGTGATGGATTCCCACGGCGTCATCATCGCCAGCGGCGATCCGGCACGGCTGGGGC
AGGTGCATGACGGCGCGTTGCGGGTCATGGCCCGGCAGGAGGCGGTCGAGATCGAACCCCGGGCCGCGCCGCCGGACGGC
GACGCGCGGCCCGGCGTCAACCTGCCGCTGCGGCTGGGCGGAGCGGTCGTCGGCTGCGTCGGGCTGACGGGTGTGCCGGG
GACCATCCGCCCCTATGCGGAACTGGTCCGCATGGCGGCGGAGACCATGCTGGAGCAGGCACAGCAGAGCCGCACCCTGT
CCCGCGAGACCCGCCTGCGGGAAGAACTGGTCCTGAGCCTGATCCGCGACGAAGCCCCCATCCCCGCGCTGGCGGCGTCG
GCGGCGCGGCTGGGCATCGACCTGCGGCCGGCCCGCGTGGCCGCGATCGTCGAGATCCTGCCTCGGACACAGGACGGCAT
CGCCCTGGTGGGGGACATGCACCGGCTCGGCACCCTGCTGGGCGCGCCGGACCAGGGCAACCTGGTCGCCCCGCTGTCGC
TGACCGAAATCGCGGTCCTGACGCCGGCGCTGACCGCCCGCGGGACATGGGACCCGGACCGCCTGCGCGAGCGGGCGCAG
CGGCTGCTGGCCCGCGCGCAAACGGCCACGGGCCTGGACCTGCGGCTGGCGCTGGGGCGCCCTGTCGAAGGGCCGGGAGG
CATGGCACGCTCCTACCAGGTGGCGCGCGCGACGCTGGCGGCCGGACGGCGGCTGCACCCGGCGCGGCGCGCGCTGTTCT
ATGAGGACATGCGCCTGCCGGTGCTGCTGGACGACCCGCTGCGGGACTGGCGGACGCAGGAACTGCGCGCCCCGCTGCGC
CCCCTGACCGATGCGGCGCGGCATGCCCCGCTGCTGCGCACGCTGCGGACCTGGCTGGACCATGGCATGCAGCAGCGTGC
GACCGCCGCCGCCCTGGGCCTGCATCGCAACAGCCTGGATTACCGGCTGCGGCAAATCGAACGGCTCTGCGGCGTCGACC
TGACGCGCAGCGCGGATATCGTCGCGCTGTACCTGGCCCTGCACCTGACCCCGGACGCGGTCCCGGACCGGCCCGCGGAC
CCCGATCCCGCCCCCGTGGTCACGTGA

Upstream 100 bases:

>100_bases
CACCTGCGTCTGGAGGGTTTCGCTGATGCTACGGCCGAATGATCTGGCCGTCTTTGTGCATCTGCACTAAAAATACCCAT
GACGGAGCCCGAAATTCCGG

Downstream 100 bases:

>100_bases
GATCATATTCGGTTACATACGGTTTCTTTCCCTCCCCGCCCCGGGGCCACATCATCGACCGATCTGTTCATCGCTTTACG
GACCTGACCATGACCCATTC

Product: carbohydrate diacid regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MDDGAHETMPSVAIDPALAQAIVDRSMTVIACNINVMDSHGVIIASGDPARLGQVHDGALRVMARQEAVEIEPRAAPPDG
DARPGVNLPLRLGGAVVGCVGLTGVPGTIRPYAELVRMAAETMLEQAQQSRTLSRETRLREELVLSLIRDEAPIPALAAS
AARLGIDLRPARVAAIVEILPRTQDGIALVGDMHRLGTLLGAPDQGNLVAPLSLTEIAVLTPALTARGTWDPDRLRERAQ
RLLARAQTATGLDLRLALGRPVEGPGGMARSYQVARATLAAGRRLHPARRALFYEDMRLPVLLDDPLRDWRTQELRAPLR
PLTDAARHAPLLRTLRTWLDHGMQQRATAAALGLHRNSLDYRLRQIERLCGVDLTRSADIVALYLALHLTPDAVPDRPAD
PDPAPVVT

Sequences:

>Translated_408_residues
MDDGAHETMPSVAIDPALAQAIVDRSMTVIACNINVMDSHGVIIASGDPARLGQVHDGALRVMARQEAVEIEPRAAPPDG
DARPGVNLPLRLGGAVVGCVGLTGVPGTIRPYAELVRMAAETMLEQAQQSRTLSRETRLREELVLSLIRDEAPIPALAAS
AARLGIDLRPARVAAIVEILPRTQDGIALVGDMHRLGTLLGAPDQGNLVAPLSLTEIAVLTPALTARGTWDPDRLRERAQ
RLLARAQTATGLDLRLALGRPVEGPGGMARSYQVARATLAAGRRLHPARRALFYEDMRLPVLLDDPLRDWRTQELRAPLR
PLTDAARHAPLLRTLRTWLDHGMQQRATAAALGLHRNSLDYRLRQIERLCGVDLTRSADIVALYLALHLTPDAVPDRPAD
PDPAPVVT
>Mature_408_residues
MDDGAHETMPSVAIDPALAQAIVDRSMTVIACNINVMDSHGVIIASGDPARLGQVHDGALRVMARQEAVEIEPRAAPPDG
DARPGVNLPLRLGGAVVGCVGLTGVPGTIRPYAELVRMAAETMLEQAQQSRTLSRETRLREELVLSLIRDEAPIPALAAS
AARLGIDLRPARVAAIVEILPRTQDGIALVGDMHRLGTLLGAPDQGNLVAPLSLTEIAVLTPALTARGTWDPDRLRERAQ
RLLARAQTATGLDLRLALGRPVEGPGGMARSYQVARATLAAGRRLHPARRALFYEDMRLPVLLDDPLRDWRTQELRAPLR
PLTDAARHAPLLRTLRTWLDHGMQQRATAAALGLHRNSLDYRLRQIERLCGVDLTRSADIVALYLALHLTPDAVPDRPAD
PDPAPVVT

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=385, Percent_Identity=44.6753246753247, Blast_Score=313, Evalue=1e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 44055; Mature: 44055

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDGAHETMPSVAIDPALAQAIVDRSMTVIACNINVMDSHGVIIASGDPARLGQVHDGAL
CCCCCHHCCCCHHCCHHHHHHHHHCCEEEEEEEEEEEECCCEEEECCCCHHCCCCCHHHH
RVMARQEAVEIEPRAAPPDGDARPGVNLPLRLGGAVVGCVGLTGVPGTIRPYAELVRMAA
HHHHHHHHHEECCCCCCCCCCCCCCCCCCEECCCHHEEHHHCCCCCCCHHHHHHHHHHHH
ETMLEQAQQSRTLSRETRLREELVLSLIRDEAPIPALAASAARLGIDLRPARVAAIVEIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
PRTQDGIALVGDMHRLGTLLGAPDQGNLVAPLSLTEIAVLTPALTARGTWDPDRLRERAQ
CCCCCCEEEEHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
RLLARAQTATGLDLRLALGRPVEGPGGMARSYQVARATLAAGRRLHPARRALFYEDMRLP
HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
VLLDDPLRDWRTQELRAPLRPLTDAARHAPLLRTLRTWLDHGMQQRATAAALGLHRNSLD
EEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YRLRQIERLCGVDLTRSADIVALYLALHLTPDAVPDRPADPDPAPVVT
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDGAHETMPSVAIDPALAQAIVDRSMTVIACNINVMDSHGVIIASGDPARLGQVHDGAL
CCCCCHHCCCCHHCCHHHHHHHHHCCEEEEEEEEEEEECCCEEEECCCCHHCCCCCHHHH
RVMARQEAVEIEPRAAPPDGDARPGVNLPLRLGGAVVGCVGLTGVPGTIRPYAELVRMAA
HHHHHHHHHEECCCCCCCCCCCCCCCCCCEECCCHHEEHHHCCCCCCCHHHHHHHHHHHH
ETMLEQAQQSRTLSRETRLREELVLSLIRDEAPIPALAASAARLGIDLRPARVAAIVEIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
PRTQDGIALVGDMHRLGTLLGAPDQGNLVAPLSLTEIAVLTPALTARGTWDPDRLRERAQ
CCCCCCEEEEHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
RLLARAQTATGLDLRLALGRPVEGPGGMARSYQVARATLAAGRRLHPARRALFYEDMRLP
HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
VLLDDPLRDWRTQELRAPLRPLTDAARHAPLLRTLRTWLDHGMQQRATAAALGLHRNSLD
EEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YRLRQIERLCGVDLTRSADIVALYLALHLTPDAVPDRPADPDPAPVVT
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]