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The map label for this gene is ydcR [C]

Identifier: 162146425

GI number: 162146425

Start: 605756

End: 607150

Strand: Reverse

Name: ydcR [C]

Synonym: GDI_0600

Alternate gene names: 162146425

Gene position: 607150-605756 (Counterclockwise)

Preceding gene: 162146426

Following gene: 162146424

Centisome position: 15.39

GC content: 70.39

Gene sequence:

>1395_bases
ATGCGCCACCATTCGCCCTGGACGCCCCACCTGGCCGAGGGCGCGCAATCACCGGCCGAACGACTGGCCGAGGCGCTTGG
CGGCGATATCCTGTCGGGCAGCCTGAAGGTCGATGACCGGCTGCCGGCGCATCGCGACCTGGCCTGGCGGCTGGGAATCG
GCGTCGGGTCGGTCACGCGGGCCTATGCCATCCTGGAACGGCGCGGACTGGTCCGGAGCGTCCATGGCCGGGGCACCTTC
GTCGCCGCGCGCCCGGACCAGGCCAGCGACCAGATCGACCTGGCGACCAACATGCCGCCGCCCATGTTCAGCGACAGGGC
GCTGGCCCGCACGCTCAACCGGCTGGCCCGCACCATCGACCCCAGATTGTTCAACATCTATCCGCCCGTCGCCGGGCATC
TGGAACACCGCCGCATCATGGCGCGCTGGCTGGCGGCGCTGGGAACCGAGGCCGAGCCCGAACGGCTGCTGCTGACCAGC
GGGGCGCAGCAGGCACTGAACGTGGCCCTGACCGTCGCGCGGCCCCATGTCGGCTATGCCGTGACCGAGGCGCAGACCTA
TCCCGGCATGCTGGGCGTGATGCGCCAGGCCGGCCTGGAGATCGAATCCGTGGCCATGGACGCCCAGGGCATGCTTCCCG
CGTCGCTCGAGGCCGTGCTGACCCGCCGGCGGCACCAGCGCGCCGTCGTCTACCTGACGCCCACCATGCAGAATCCGACA
TCCGCGACCATGGAGACGGCGCGGCGGCAGGACATCGCGCGCCTCTGCCGGCGGGCGGATGCGCTGGTGATCGAGGACGG
CGTGTATGTCCGCGAGCGCGATCCCGCGCGGCCGTCGCTGCTTGACCTGGCGCCGGAGCGGACCTTTCACGTCAGCAGCC
TGTCGAAGATCCTCAGTCCGGGACTGCGTATCGGCGTGCTGATTCCCCCGCCCCGCCACGCCGGGGCGTGCCTGCCCGCG
CTTCTGGCGTCCTCGCTGATGATCGCCCCCCTGTCCTACGCGATGATGGCGCAATGGATGCAGGACGGCACGGCCGAGAG
CGTCCGCACATCCCTGCACGCCGAGGCGATTCGCCGTCAGGACCTGGCGGTTTCCATCCTGGGGGAGTGGATGGCCGCCC
CCACCTATCACGCCTTTCATGCCTGGCTGCCGATGCCGGCCGCCCAGGCGGAAGAGATGGTCGGGCGCGCGCGGATGCTG
GGCGTTTCCCTGCCCGGCCCGCATACGTTCAGCAGCGGCGATGCGGCCGCACGCACGGCAGGCGGCGGGACGGGCGTCCG
GCTTGCCCTGGGAAGCGTCACGTTTCGTACCCTTCCCGAAGCCCTGCGGCGCGTCCGGCAGGCCTGTGACCTGTCACAGG
CAAAAGTGTCACGTGACACTATAGCGATATCCTGA

Upstream 100 bases:

>100_bases
GCTCTACTGGCAGCATGCGCGCATCGGCACGCGGCTGCTGGACGCGCTGACCCGCGACGTGGTCGCGGCGGCGGCGCGCG
GCCTGCTGGACGGGTAGACG

Downstream 100 bases:

>100_bases
AAGTGTCCCCCGCGGTTAGGGTTGCGCCGTTCGCACACACGGTCGGAGACCCGCCATGCCCGATGATCCGCAAGGCCCCG
TGACGATCGTCGCGACGTTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MRHHSPWTPHLAEGAQSPAERLAEALGGDILSGSLKVDDRLPAHRDLAWRLGIGVGSVTRAYAILERRGLVRSVHGRGTF
VAARPDQASDQIDLATNMPPPMFSDRALARTLNRLARTIDPRLFNIYPPVAGHLEHRRIMARWLAALGTEAEPERLLLTS
GAQQALNVALTVARPHVGYAVTEAQTYPGMLGVMRQAGLEIESVAMDAQGMLPASLEAVLTRRRHQRAVVYLTPTMQNPT
SATMETARRQDIARLCRRADALVIEDGVYVRERDPARPSLLDLAPERTFHVSSLSKILSPGLRIGVLIPPPRHAGACLPA
LLASSLMIAPLSYAMMAQWMQDGTAESVRTSLHAEAIRRQDLAVSILGEWMAAPTYHAFHAWLPMPAAQAEEMVGRARML
GVSLPGPHTFSSGDAAARTAGGGTGVRLALGSVTFRTLPEALRRVRQACDLSQAKVSRDTIAIS

Sequences:

>Translated_464_residues
MRHHSPWTPHLAEGAQSPAERLAEALGGDILSGSLKVDDRLPAHRDLAWRLGIGVGSVTRAYAILERRGLVRSVHGRGTF
VAARPDQASDQIDLATNMPPPMFSDRALARTLNRLARTIDPRLFNIYPPVAGHLEHRRIMARWLAALGTEAEPERLLLTS
GAQQALNVALTVARPHVGYAVTEAQTYPGMLGVMRQAGLEIESVAMDAQGMLPASLEAVLTRRRHQRAVVYLTPTMQNPT
SATMETARRQDIARLCRRADALVIEDGVYVRERDPARPSLLDLAPERTFHVSSLSKILSPGLRIGVLIPPPRHAGACLPA
LLASSLMIAPLSYAMMAQWMQDGTAESVRTSLHAEAIRRQDLAVSILGEWMAAPTYHAFHAWLPMPAAQAEEMVGRARML
GVSLPGPHTFSSGDAAARTAGGGTGVRLALGSVTFRTLPEALRRVRQACDLSQAKVSRDTIAIS
>Mature_464_residues
MRHHSPWTPHLAEGAQSPAERLAEALGGDILSGSLKVDDRLPAHRDLAWRLGIGVGSVTRAYAILERRGLVRSVHGRGTF
VAARPDQASDQIDLATNMPPPMFSDRALARTLNRLARTIDPRLFNIYPPVAGHLEHRRIMARWLAALGTEAEPERLLLTS
GAQQALNVALTVARPHVGYAVTEAQTYPGMLGVMRQAGLEIESVAMDAQGMLPASLEAVLTRRRHQRAVVYLTPTMQNPT
SATMETARRQDIARLCRRADALVIEDGVYVRERDPARPSLLDLAPERTFHVSSLSKILSPGLRIGVLIPPPRHAGACLPA
LLASSLMIAPLSYAMMAQWMQDGTAESVRTSLHAEAIRRQDLAVSILGEWMAAPTYHAFHAWLPMPAAQAEEMVGRARML
GVSLPGPHTFSSGDAAARTAGGGTGVRLALGSVTFRTLPEALRRVRQACDLSQAKVSRDTIAIS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=204, Percent_Identity=28.921568627451, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI33469970, Length=204, Percent_Identity=28.921568627451, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI1787710, Length=447, Percent_Identity=25.7270693512304, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1790797, Length=330, Percent_Identity=25.4545454545455, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50317; Mature: 50317

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHHSPWTPHLAEGAQSPAERLAEALGGDILSGSLKVDDRLPAHRDLAWRLGIGVGSVTR
CCCCCCCCCHHHHHCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEECCCHHHHHH
AYAILERRGLVRSVHGRGTFVAARPDQASDQIDLATNMPPPMFSDRALARTLNRLARTID
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHC
PRLFNIYPPVAGHLEHRRIMARWLAALGTEAEPERLLLTSGAQQALNVALTVARPHVGYA
CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHEEEEEECCCCCEE
VTEAQTYPGMLGVMRQAGLEIESVAMDAQGMLPASLEAVLTRRRHQRAVVYLTPTMQNPT
EECCHHCCHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCC
SATMETARRQDIARLCRRADALVIEDGVYVRERDPARPSLLDLAPERTFHVSSLSKILSP
HHHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCHHHCCCCCEEHHHHHHHHHCC
GLRIGVLIPPPRHAGACLPALLASSLMIAPLSYAMMAQWMQDGTAESVRTSLHAEAIRRQ
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DLAVSILGEWMAAPTYHAFHAWLPMPAAQAEEMVGRARMLGVSLPGPHTFSSGDAAARTA
HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHCC
GGGTGVRLALGSVTFRTLPEALRRVRQACDLSQAKVSRDTIAIS
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEECC
>Mature Secondary Structure
MRHHSPWTPHLAEGAQSPAERLAEALGGDILSGSLKVDDRLPAHRDLAWRLGIGVGSVTR
CCCCCCCCCHHHHHCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEECCCHHHHHH
AYAILERRGLVRSVHGRGTFVAARPDQASDQIDLATNMPPPMFSDRALARTLNRLARTID
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHC
PRLFNIYPPVAGHLEHRRIMARWLAALGTEAEPERLLLTSGAQQALNVALTVARPHVGYA
CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHEEEEEECCCCCEE
VTEAQTYPGMLGVMRQAGLEIESVAMDAQGMLPASLEAVLTRRRHQRAVVYLTPTMQNPT
EECCHHCCHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCC
SATMETARRQDIARLCRRADALVIEDGVYVRERDPARPSLLDLAPERTFHVSSLSKILSP
HHHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCHHHCCCCCEEHHHHHHHHHCC
GLRIGVLIPPPRHAGACLPALLASSLMIAPLSYAMMAQWMQDGTAESVRTSLHAEAIRRQ
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DLAVSILGEWMAAPTYHAFHAWLPMPAAQAEEMVGRARMLGVSLPGPHTFSSGDAAARTA
HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHCC
GGGTGVRLALGSVTFRTLPEALRRVRQACDLSQAKVSRDTIAIS
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]