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The map label for this gene is glgB [H]

Identifier: 162146369

GI number: 162146369

Start: 539810

End: 542038

Strand: Direct

Name: glgB [H]

Synonym: GDI_0544

Alternate gene names: 162146369

Gene position: 539810-542038 (Clockwise)

Preceding gene: 162146368

Following gene: 162146370

Centisome position: 13.69

GC content: 67.16

Gene sequence:

>2229_bases
ATGAATGCTGCCCGGAACGACTGTACCTACACCCTTCCATCGGGGACCGAAGACCTGCTTGCCGGAACCTGTCCCGATCC
GTTCTCCATCCTGGGGCGGCACCCGCATGGCCGCGTGGACATCGTCCGCGCCTTCTGCCCCGACGCGCGGGGGGTGCGGC
TGGTGGTGCAGCGCCCGCGCTCGGGCCCGGCCGAACGCCCCATGCGCCTGGTCGACGACCGGGGCCTGTATGTCGGCACC
GTCCCCGCCGGGGCGCGCTACCGGCTGAAGATCGGCTGGGCCGACGGGTGGGAGGAGATCGACGATCCGTATTCCTTCGG
GCTGCTGCTGGGCGATCTGGACCTGCATCTGTTCACCCAGGGCCTGCATCGCGACCTGGATCGCGTGATGGGCGCGCAGG
CCATGACCGTGGACGGCGTGGCCGGGGTGCGTTTCGCGGTCTGGGCGCCCAATGCCTTCCGCGTCTCGGTGATCGGCGAC
TTCAATGTGTGGGACGGCCGCCGCCATCCGATGCGCCTGCGCCATGCCGCCGGGATCTGGGAACTGTTCATTCCCGGCAT
CGGCCCCGGCGAGCGCTACAAGTATGAAATCCTGGATGCCGAACGCCGCCTGCTGCCGCCCAAGGCCGACCCGATGGCGC
TGGCGGCGGAACAGCCGCCCGCCACGGCCTCGGTCGTGGCCGATCCCACGCCGTTCGAATGGACCGACGCCGCCTGGATG
GAAAACCGCCAGGACCGGCAAGGCATCACCGCCCCGCTGTCGATCTACGAAGTCCATGCCGCGTCATGGCGCCGTCCGGA
GGGCGACCCGCAGGGCATCATGCACTGGGACCGGCTGGAGCGGGAACTGATCCCCTACGTGGTGGAAATGGGGTTCAGCC
ATATCGAGCTGATGCCCATCATGGAACATCCCTTCGACGGGTCCTGGGGGTACCAGACGCTGGGGCTGTACGCGCCCTCG
GCGCGCTTCGGCTCGCCCCGGCAGTTCGCCTCGTTCGTGAATGCCTGCCACAATGCGGGGCTGGGGGTGATCCTGGACTG
GGTGCCGGCGCATTTTCCCTCCGACGCGCATGGCCTGGCCCTGTTCGATGGGTCTTTCCTGTACGAGCACCAGGATCGGC
GTGAAGGATTCCATCCCGACTGGAACACGCTGATCTACAATTTCGGCCGGCACGAAATCCGCGGTTTCCTGATCGGCAGC
GCCCTGATGTGGCTGCGGCGCTATCATATCGACGGGCTGCGGGTCGATGCCGTGGCCTCGATGCTCTATCGCGACTACAG
CCGGCGCGAGGGGGAATGGATCTCGAACATCCATGGCGGGCGCGAAAACCTGGAAGCGATCGCGTTCCTTCGCGGCCTGA
ACACCACGATCGCGGAACTCTGCCCCTCGGCGGTCATGATGGCGGAGGAATCGACGGCCTGGCCCGGCGTCAGCCAGCCG
GTCGTCGATGGCGGGCTGGGCTTTTCCTACAAATGGAACATGGGCTGGATGCACGACACGCTGGCCTACATGTCGCGCGA
CCCGATCTGGCGGCGCTATCACCATTCCGAAATCATGTTCGGCCTGCACTACGCTTTTTCGGAACGATTCGTGCTGCCCC
TGTCGCATGACGAGGTCGTGCACGGCAAGGGCTCGCTGATCGCGCGCATGCCCGGTGACGAATGGCGCAAGCATGCCGGT
CTGCGCGCCTATTTCGCCTTCATGTGGGCCCATCCGGGCAAGAAGCTGCTGTTCATGGGCGGCGAACTGGCCCAGCCGCA
CGAATGGCATGCCGATGGCGAACTGGCCTGGTACGGTCTGGCGCAGCCGCTGGTCCAGGGGGTGCAGACCCTGGTCCGCG
ACGTCAACCGGCTGTATGCCGCCTATCCCGCCCTGCATCGTGCCGACTGCACGCCCGACGGCTTCGCCTGGGTGATCGGC
GACGACAGCGACAACGCCGTCTTCGCCTGGCTGCGCATGGCACCGGGCGTCGCCCCGGTGCTGGTGGTGTGCAACATGAC
GCCGATACCCCGCCCGCTATATCGCGTCGGCGTGCCGTGCGGCGGATACTGGCGCGAACTGCTGAATACCGATGCCGGAG
AGTACGCGGGTTCGGGCATGGGCAACGGCGGCGGCGCGCAGGCCCTGCCCGAGCCGTCGCATGGCTACGACCAGTCCTGC
GTGCTGGTCCTGCCGCCCCTGGCGGTGCTGTACCTCTCGCCCGAATCCTTTGGCGGGGGCTGGGCATGA

Upstream 100 bases:

>100_bases
CGGCGGGTCCTGTCCGTCCCGCCCGCCTGACTGACGCCGTGTCGTTCCCGCCTGCCGTCTCCCTGTGCCGTCCCATGCCT
GCCCGCCGGAATCCCGTCAT

Downstream 100 bases:

>100_bases
TGCGCTTCCCCACCCGGCTGATGCCGGGGGCGGACACGCCGCTGGGTGCGAGCTGGGACGGGCTGGGCGTCAATTTCGCG
GTCTTCTCCGCCAACGCGCT

Product: 1,4-alpha-glucan branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 742; Mature: 742

Protein sequence:

>742_residues
MNAARNDCTYTLPSGTEDLLAGTCPDPFSILGRHPHGRVDIVRAFCPDARGVRLVVQRPRSGPAERPMRLVDDRGLYVGT
VPAGARYRLKIGWADGWEEIDDPYSFGLLLGDLDLHLFTQGLHRDLDRVMGAQAMTVDGVAGVRFAVWAPNAFRVSVIGD
FNVWDGRRHPMRLRHAAGIWELFIPGIGPGERYKYEILDAERRLLPPKADPMALAAEQPPATASVVADPTPFEWTDAAWM
ENRQDRQGITAPLSIYEVHAASWRRPEGDPQGIMHWDRLERELIPYVVEMGFSHIELMPIMEHPFDGSWGYQTLGLYAPS
ARFGSPRQFASFVNACHNAGLGVILDWVPAHFPSDAHGLALFDGSFLYEHQDRREGFHPDWNTLIYNFGRHEIRGFLIGS
ALMWLRRYHIDGLRVDAVASMLYRDYSRREGEWISNIHGGRENLEAIAFLRGLNTTIAELCPSAVMMAEESTAWPGVSQP
VVDGGLGFSYKWNMGWMHDTLAYMSRDPIWRRYHHSEIMFGLHYAFSERFVLPLSHDEVVHGKGSLIARMPGDEWRKHAG
LRAYFAFMWAHPGKKLLFMGGELAQPHEWHADGELAWYGLAQPLVQGVQTLVRDVNRLYAAYPALHRADCTPDGFAWVIG
DDSDNAVFAWLRMAPGVAPVLVVCNMTPIPRPLYRVGVPCGGYWRELLNTDAGEYAGSGMGNGGGAQALPEPSHGYDQSC
VLVLPPLAVLYLSPESFGGGWA

Sequences:

>Translated_742_residues
MNAARNDCTYTLPSGTEDLLAGTCPDPFSILGRHPHGRVDIVRAFCPDARGVRLVVQRPRSGPAERPMRLVDDRGLYVGT
VPAGARYRLKIGWADGWEEIDDPYSFGLLLGDLDLHLFTQGLHRDLDRVMGAQAMTVDGVAGVRFAVWAPNAFRVSVIGD
FNVWDGRRHPMRLRHAAGIWELFIPGIGPGERYKYEILDAERRLLPPKADPMALAAEQPPATASVVADPTPFEWTDAAWM
ENRQDRQGITAPLSIYEVHAASWRRPEGDPQGIMHWDRLERELIPYVVEMGFSHIELMPIMEHPFDGSWGYQTLGLYAPS
ARFGSPRQFASFVNACHNAGLGVILDWVPAHFPSDAHGLALFDGSFLYEHQDRREGFHPDWNTLIYNFGRHEIRGFLIGS
ALMWLRRYHIDGLRVDAVASMLYRDYSRREGEWISNIHGGRENLEAIAFLRGLNTTIAELCPSAVMMAEESTAWPGVSQP
VVDGGLGFSYKWNMGWMHDTLAYMSRDPIWRRYHHSEIMFGLHYAFSERFVLPLSHDEVVHGKGSLIARMPGDEWRKHAG
LRAYFAFMWAHPGKKLLFMGGELAQPHEWHADGELAWYGLAQPLVQGVQTLVRDVNRLYAAYPALHRADCTPDGFAWVIG
DDSDNAVFAWLRMAPGVAPVLVVCNMTPIPRPLYRVGVPCGGYWRELLNTDAGEYAGSGMGNGGGAQALPEPSHGYDQSC
VLVLPPLAVLYLSPESFGGGWA
>Mature_742_residues
MNAARNDCTYTLPSGTEDLLAGTCPDPFSILGRHPHGRVDIVRAFCPDARGVRLVVQRPRSGPAERPMRLVDDRGLYVGT
VPAGARYRLKIGWADGWEEIDDPYSFGLLLGDLDLHLFTQGLHRDLDRVMGAQAMTVDGVAGVRFAVWAPNAFRVSVIGD
FNVWDGRRHPMRLRHAAGIWELFIPGIGPGERYKYEILDAERRLLPPKADPMALAAEQPPATASVVADPTPFEWTDAAWM
ENRQDRQGITAPLSIYEVHAASWRRPEGDPQGIMHWDRLERELIPYVVEMGFSHIELMPIMEHPFDGSWGYQTLGLYAPS
ARFGSPRQFASFVNACHNAGLGVILDWVPAHFPSDAHGLALFDGSFLYEHQDRREGFHPDWNTLIYNFGRHEIRGFLIGS
ALMWLRRYHIDGLRVDAVASMLYRDYSRREGEWISNIHGGRENLEAIAFLRGLNTTIAELCPSAVMMAEESTAWPGVSQP
VVDGGLGFSYKWNMGWMHDTLAYMSRDPIWRRYHHSEIMFGLHYAFSERFVLPLSHDEVVHGKGSLIARMPGDEWRKHAG
LRAYFAFMWAHPGKKLLFMGGELAQPHEWHADGELAWYGLAQPLVQGVQTLVRDVNRLYAAYPALHRADCTPDGFAWVIG
DDSDNAVFAWLRMAPGVAPVLVVCNMTPIPRPLYRVGVPCGGYWRELLNTDAGEYAGSGMGNGGGAQALPEPSHGYDQSC
VLVLPPLAVLYLSPESFGGGWA

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=605, Percent_Identity=26.7768595041322, Blast_Score=161, Evalue=3e-39,
Organism=Escherichia coli, GI1789839, Length=723, Percent_Identity=52.2821576763486, Blast_Score=734, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=439, Percent_Identity=25.7403189066059, Blast_Score=142, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI32564391, Length=344, Percent_Identity=26.7441860465116, Blast_Score=125, Evalue=9e-29,
Organism=Saccharomyces cerevisiae, GI6320826, Length=627, Percent_Identity=25.518341307815, Blast_Score=150, Evalue=7e-37,
Organism=Drosophila melanogaster, GI28573410, Length=362, Percent_Identity=30.1104972375691, Blast_Score=157, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 82946; Mature: 82946

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAARNDCTYTLPSGTEDLLAGTCPDPFSILGRHPHGRVDIVRAFCPDARGVRLVVQRPR
CCCCCCCCEEECCCCCHHHHCCCCCCHHHHHCCCCCCCEEEHHHHCCCCCCEEEEEECCC
SGPAERPMRLVDDRGLYVGTVPAGARYRLKIGWADGWEEIDDPYSFGLLLGDLDLHLFTQ
CCCCCCCHHHCCCCCEEEEECCCCCEEEEEEECCCCHHHHCCCCEEEEEEECCHHHHHHH
GLHRDLDRVMGAQAMTVDGVAGVRFAVWAPNAFRVSVIGDFNVWDGRRHPMRLRHAAGIW
HHHHHHHHHHCCCEEEECCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHCCEE
ELFIPGIGPGERYKYEILDAERRLLPPKADPMALAAEQPPATASVVADPTPFEWTDAAWM
EEECCCCCCCCCEEEEEECCHHHCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCHHHH
ENRQDRQGITAPLSIYEVHAASWRRPEGDPQGIMHWDRLERELIPYVVEMGFSHIELMPI
CCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEH
MEHPFDGSWGYQTLGLYAPSARFGSPRQFASFVNACHNAGLGVILDWVPAHFPSDAHGLA
HCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEE
LFDGSFLYEHQDRREGFHPDWNTLIYNFGRHEIRGFLIGSALMWLRRYHIDGLRVDAVAS
EECCCEEECCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
MLYRDYSRREGEWISNIHGGRENLEAIAFLRGLNTTIAELCPSAVMMAEESTAWPGVSQP
HHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCHHEEEECCCCCCCCCCCC
VVDGGLGFSYKWNMGWMHDTLAYMSRDPIWRRYHHSEIMFGLHYAFSERFVLPLSHDEVV
CCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCEEEECCCCCEE
HGKGSLIARMPGDEWRKHAGLRAYFAFMWAHPGKKLLFMGGELAQPHEWHADGELAWYGL
ECCCCEEEECCCHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEHHH
AQPLVQGVQTLVRDVNRLYAAYPALHRADCTPDGFAWVIGDDSDNAVFAWLRMAPGVAPV
HHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCEEEEEECCCCCEEEEEEHHCCCCCEE
LVVCNMTPIPRPLYRVGVPCGGYWRELLNTDAGEYAGSGMGNGGGAQALPEPSHGYDQSC
EEEECCCCCCCCHHHHCCCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEE
VLVLPPLAVLYLSPESFGGGWA
EEEECCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNAARNDCTYTLPSGTEDLLAGTCPDPFSILGRHPHGRVDIVRAFCPDARGVRLVVQRPR
CCCCCCCCEEECCCCCHHHHCCCCCCHHHHHCCCCCCCEEEHHHHCCCCCCEEEEEECCC
SGPAERPMRLVDDRGLYVGTVPAGARYRLKIGWADGWEEIDDPYSFGLLLGDLDLHLFTQ
CCCCCCCHHHCCCCCEEEEECCCCCEEEEEEECCCCHHHHCCCCEEEEEEECCHHHHHHH
GLHRDLDRVMGAQAMTVDGVAGVRFAVWAPNAFRVSVIGDFNVWDGRRHPMRLRHAAGIW
HHHHHHHHHHCCCEEEECCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHCCEE
ELFIPGIGPGERYKYEILDAERRLLPPKADPMALAAEQPPATASVVADPTPFEWTDAAWM
EEECCCCCCCCCEEEEEECCHHHCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCHHHH
ENRQDRQGITAPLSIYEVHAASWRRPEGDPQGIMHWDRLERELIPYVVEMGFSHIELMPI
CCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEH
MEHPFDGSWGYQTLGLYAPSARFGSPRQFASFVNACHNAGLGVILDWVPAHFPSDAHGLA
HCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEE
LFDGSFLYEHQDRREGFHPDWNTLIYNFGRHEIRGFLIGSALMWLRRYHIDGLRVDAVAS
EECCCEEECCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
MLYRDYSRREGEWISNIHGGRENLEAIAFLRGLNTTIAELCPSAVMMAEESTAWPGVSQP
HHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCHHEEEECCCCCCCCCCCC
VVDGGLGFSYKWNMGWMHDTLAYMSRDPIWRRYHHSEIMFGLHYAFSERFVLPLSHDEVV
CCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCEEEECCCCCEE
HGKGSLIARMPGDEWRKHAGLRAYFAFMWAHPGKKLLFMGGELAQPHEWHADGELAWYGL
ECCCCEEEECCCHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEHHH
AQPLVQGVQTLVRDVNRLYAAYPALHRADCTPDGFAWVIGDDSDNAVFAWLRMAPGVAPV
HHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCEEEEEECCCCCEEEEEEHHCCCCCEE
LVVCNMTPIPRPLYRVGVPCGGYWRELLNTDAGEYAGSGMGNGGGAQALPEPSHGYDQSC
EEEECCCCCCCCHHHHCCCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEE
VLVLPPLAVLYLSPESFGGGWA
EEEECCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA