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The map label for this gene is cydA [H]

Identifier: 162146360

GI number: 162146360

Start: 529261

End: 530661

Strand: Reverse

Name: cydA [H]

Synonym: GDI_0535

Alternate gene names: 162146360

Gene position: 530661-529261 (Counterclockwise)

Preceding gene: 162146361

Following gene: 162146359

Centisome position: 13.45

GC content: 67.45

Gene sequence:

>1401_bases
ATGCACGCCCCCGACCCCCTGCTGCTTGCGCGTCTCCAGTTCGGCTTTACCGTATCCTTCCACATCCTCTTCCCGGCCAT
CACCATCGGGCTGGCCAGCTACCTGGCGGTGCTGGAGGGACTGTGGCTGGCGCGCGGGGCGCCGGTGTTCAAGGACCTGT
ATCATTTCTGGTCCAAGCTGTTTGCCGTGAATTTCGCCATGGGCGTCGTCTCGGGCCTGGTGATGTCCTACGAATTCGGC
ACGAACTGGAGCTATTTCTCCACCTTCGCCGGGGGCGTGACCGGGCCGCTTCTGACCTACGAGGTCCTGACCGCCTTCTT
CCTGGAAGCCGGATTCCTGGGGGTCATGCTGTTCGGCTGGGACAAGGTCGGACGCGGGCTGCATTTCTTCGCCACGGTGA
TGGTGGCGCTCGGCACGCTGGTGTCCGCGACATGGATCCTGGCGTCGAACAGCTGGATGCAGACGCCGCAGGGCTACCGG
ATCGCGGACGGGCGCGTCGTGCCCGTCGACTGGCTGCAGATCATCTTCAACCCGTCCTTTCCCTACCGGCTGGTCCATAT
GGGCATCGCGGCCTTCCTGGCGACGGCGCTGTTCGTCGGCGCGGTGGCGGCGTGGCACCTGCTGAAGGGGCGCGACACGC
CCGCCATCCGCACCATGATGTCGATGGCGATGTGGATGCTGCTGGTCGTCACCCCGATCCAGATCCTGGTCGGCGACCTG
CACGGCCGCAACACGCTGGAACACCAGCCGGCCAAGATCGCGGCGATCGAGGGCCACTGGCAGAACGCGCCGGGGGCGGA
CGTGCCGCTGATCCTGTTCGGGGTGCCGGACATGGCCGCCGAGACCACGCGCTACGCCGTCGAAATCCCGCATGCGGGCA
GCCTGATCCTGACCCATAGCTGGAACGGGCAGATTCCGGGCCTGAAGGAATTCCCGGCCGAGGACCGTCCGAATTCCACC
ATCATCTTCTGGACCTTCCGGGTCATGGTGGGGCTGGGCACGCTGATGCTGCTGCTGGCGCTGGTCGGGCTGGCCCTGCG
CGCGCGCGGGCGCCTGTTCGCCAACCGGCCGTTCCTGACGGCCACGGTCGCGATGGGGCCGACCGGGCTGGCCGCGATCC
TGGCGGGGTGGATGACGACCGAGATCGGGCGCCAGCCCTGGGTGGTCTATGGCGTGATGCGCACGCGCGACGCGGTGTCG
AACCATTCGGCGGCGACGTTGAGCGTCAGCCTGCTGATCTTCGTCGTCCTGTATTGCGGGGTATTCGGTACCGGCATCGG
CTACCTGCTGAAGCTGGCGGCCCACGGCCCCGACACGCAAGGCGTATCCCCCGCCGATGGCGACCGGCCCGACAAGCGGC
CGGCCCGCCCGCTCTCCGCCGCCCCAGACATGCTGTCCTGA

Upstream 100 bases:

>100_bases
ATGGCAGGGGCGATGGAACCCATGAAAGGGTCCGGCTGTTCTGGTTGCAGGCCCGCCCCCGCCAGGGCTGCTGATGGCCC
CCCATCACAGGAGCGGATTC

Downstream 100 bases:

>100_bases
AGGAATACCAGACATGGGTATCGATCTTCCGCTGATCTGGGTCGTCATCATCGGGTTCGGGCTGATGATGTACGTCATCA
TGGACGGGTTCGACCTGGGG

Product: cytochrome d ubiquinol oxidase subunit 1

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MHAPDPLLLARLQFGFTVSFHILFPAITIGLASYLAVLEGLWLARGAPVFKDLYHFWSKLFAVNFAMGVVSGLVMSYEFG
TNWSYFSTFAGGVTGPLLTYEVLTAFFLEAGFLGVMLFGWDKVGRGLHFFATVMVALGTLVSATWILASNSWMQTPQGYR
IADGRVVPVDWLQIIFNPSFPYRLVHMGIAAFLATALFVGAVAAWHLLKGRDTPAIRTMMSMAMWMLLVVTPIQILVGDL
HGRNTLEHQPAKIAAIEGHWQNAPGADVPLILFGVPDMAAETTRYAVEIPHAGSLILTHSWNGQIPGLKEFPAEDRPNST
IIFWTFRVMVGLGTLMLLLALVGLALRARGRLFANRPFLTATVAMGPTGLAAILAGWMTTEIGRQPWVVYGVMRTRDAVS
NHSAATLSVSLLIFVVLYCGVFGTGIGYLLKLAAHGPDTQGVSPADGDRPDKRPARPLSAAPDMLS

Sequences:

>Translated_466_residues
MHAPDPLLLARLQFGFTVSFHILFPAITIGLASYLAVLEGLWLARGAPVFKDLYHFWSKLFAVNFAMGVVSGLVMSYEFG
TNWSYFSTFAGGVTGPLLTYEVLTAFFLEAGFLGVMLFGWDKVGRGLHFFATVMVALGTLVSATWILASNSWMQTPQGYR
IADGRVVPVDWLQIIFNPSFPYRLVHMGIAAFLATALFVGAVAAWHLLKGRDTPAIRTMMSMAMWMLLVVTPIQILVGDL
HGRNTLEHQPAKIAAIEGHWQNAPGADVPLILFGVPDMAAETTRYAVEIPHAGSLILTHSWNGQIPGLKEFPAEDRPNST
IIFWTFRVMVGLGTLMLLLALVGLALRARGRLFANRPFLTATVAMGPTGLAAILAGWMTTEIGRQPWVVYGVMRTRDAVS
NHSAATLSVSLLIFVVLYCGVFGTGIGYLLKLAAHGPDTQGVSPADGDRPDKRPARPLSAAPDMLS
>Mature_466_residues
MHAPDPLLLARLQFGFTVSFHILFPAITIGLASYLAVLEGLWLARGAPVFKDLYHFWSKLFAVNFAMGVVSGLVMSYEFG
TNWSYFSTFAGGVTGPLLTYEVLTAFFLEAGFLGVMLFGWDKVGRGLHFFATVMVALGTLVSATWILASNSWMQTPQGYR
IADGRVVPVDWLQIIFNPSFPYRLVHMGIAAFLATALFVGAVAAWHLLKGRDTPAIRTMMSMAMWMLLVVTPIQILVGDL
HGRNTLEHQPAKIAAIEGHWQNAPGADVPLILFGVPDMAAETTRYAVEIPHAGSLILTHSWNGQIPGLKEFPAEDRPNST
IIFWTFRVMVGLGTLMLLLALVGLALRARGRLFANRPFLTATVAMGPTGLAAILAGWMTTEIGRQPWVVYGVMRTRDAVS
NHSAATLSVSLLIFVVLYCGVFGTGIGYLLKLAAHGPDTQGVSPADGDRPDKRPARPLSAAPDMLS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=308, Percent_Identity=38.961038961039, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1787212, Length=318, Percent_Identity=37.1069182389937, Blast_Score=226, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50646; Mature: 50646

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPDPLLLARLQFGFTVSFHILFPAITIGLASYLAVLEGLWLARGAPVFKDLYHFWSKL
CCCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FAVNFAMGVVSGLVMSYEFGTNWSYFSTFAGGVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
DKVGRGLHFFATVMVALGTLVSATWILASNSWMQTPQGYRIADGRVVPVDWLQIIFNPSF
HHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEECCCEECHHHHHHHHCCCCC
PYRLVHMGIAAFLATALFVGAVAAWHLLKGRDTPAIRTMMSMAMWMLLVVTPIQILVGDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
HGRNTLEHQPAKIAAIEGHWQNAPGADVPLILFGVPDMAAETTRYAVEIPHAGSLILTHS
CCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHCCCEEEEECCCCCCEEEEEC
WNGQIPGLKEFPAEDRPNSTIIFWTFRVMVGLGTLMLLLALVGLALRARGRLFANRPFLT
CCCCCCCHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEE
ATVAMGPTGLAAILAGWMTTEIGRQPWVVYGVMRTRDAVSNHSAATLSVSLLIFVVLYCG
EEEECCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VFGTGIGYLLKLAAHGPDTQGVSPADGDRPDKRPARPLSAAPDMLS
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHAPDPLLLARLQFGFTVSFHILFPAITIGLASYLAVLEGLWLARGAPVFKDLYHFWSKL
CCCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FAVNFAMGVVSGLVMSYEFGTNWSYFSTFAGGVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
DKVGRGLHFFATVMVALGTLVSATWILASNSWMQTPQGYRIADGRVVPVDWLQIIFNPSF
HHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEECCCEECHHHHHHHHCCCCC
PYRLVHMGIAAFLATALFVGAVAAWHLLKGRDTPAIRTMMSMAMWMLLVVTPIQILVGDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
HGRNTLEHQPAKIAAIEGHWQNAPGADVPLILFGVPDMAAETTRYAVEIPHAGSLILTHS
CCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHCCCEEEEECCCCCCEEEEEC
WNGQIPGLKEFPAEDRPNSTIIFWTFRVMVGLGTLMLLLALVGLALRARGRLFANRPFLT
CCCCCCCHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEE
ATVAMGPTGLAAILAGWMTTEIGRQPWVVYGVMRTRDAVSNHSAATLSVSLLIFVVLYCG
EEEECCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VFGTGIGYLLKLAAHGPDTQGVSPADGDRPDKRPARPLSAAPDMLS
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]