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The map label for this gene is cydB [H]

Identifier: 162146359

GI number: 162146359

Start: 528240

End: 529247

Strand: Reverse

Name: cydB [H]

Synonym: GDI_0534

Alternate gene names: 162146359

Gene position: 529247-528240 (Counterclockwise)

Preceding gene: 162146360

Following gene: 162146358

Centisome position: 13.42

GC content: 66.47

Gene sequence:

>1008_bases
ATGGGTATCGATCTTCCGCTGATCTGGGTCGTCATCATCGGGTTCGGGCTGATGATGTACGTCATCATGGACGGGTTCGA
CCTGGGGATCGGCATCCTCTCTCCCTTCGTGCCGGACCGGGCCGAGCGCGACCTGATGGTCAATACCGTGGCCCCGGTCT
GGGACGGGAACGAGACCTGGCTGGTCCTGGGCGCCGCCGCGATGTACGGGGCCTTCCCGCTGGCCTATTCGCTGCTGCTG
AGCGCGCTGTACCTGCCGCTGGTCCTGATGCTGGCGGGGCTGATCTGCCGGGGCGTGGCGTTCGAGTTCCGCTTCAAGGC
GGACGAGGCGCACCGGCCGTTCTGGGACTACGTCTTCGCCGGCGGGTCGTACGTCGCGACCTTTTTCCAGGGGGTGTCGC
TGGGGGCGTTCATCGACGGGTTCCAGGTCAGCGGACCGTCCTATCTGGGCGGGGCGCTGGACTGGCTGTCGCCGTTCAGC
GTGTTCACCGGGCTGGGGTTGGTTGTGGCCTATGCCCTGCTGGGCGCGACCTGGCTGACGATGAAGACGGCGGGGAGCCT
GCAGGCGCGGATGATCGTCTGCGCCCGGTGGGTGACGCCGCTGCTGCTGGTGGCGATCGCCATCGTCAGCCTGTGGACGC
CGCTGACGCACCCCGCGATCGCCACCCGCTGGTTTTCGCGGCCCAACCTGTATTATTTCGCCCCGGTGCCGGTCCTGATC
CTGGGGGCGAGCGCGCTGCTGCTGCACCAGTTGCGCGGCGCACCGCATGCCGCGCCGTTCTTCCTGACGCTGATCATGCT
GTTCCTGGGGTATAGCGGGCTGGCGATCAGCCTGTGGCCGAACATCATCCCGCCCGGCATTTCCTTCCGCGCCGTCGCCA
GTCCGCCGGAAAGCATGGGCTTCGCCCTGGTCGGCACGCTGTTCATCATCCCGGTCATCCTGACCTATACCGCGTGGGCC
TATCACGTGTTTCGCGGCAAGGTCACATCCAGCGAAGGGTACCATTGA

Upstream 100 bases:

>100_bases
ACGCAAGGCGTATCCCCCGCCGATGGCGACCGGCCCGACAAGCGGCCGGCCCGCCCGCTCTCCGCCGCCCCAGACATGCT
GTCCTGAAGGAATACCAGAC

Downstream 100 bases:

>100_bases
TGCCGCCCTGGACGCGCCGCCTGGGCTGGATGGCCGTTATCTGGACCGCCAGCGTGCTGGCCCTGGGCGTGTTCGCCATG
CTGATGCACCTGCTGATGGC

Product: cytochrome d ubiquinol oxidase subunit 2

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MGIDLPLIWVVIIGFGLMMYVIMDGFDLGIGILSPFVPDRAERDLMVNTVAPVWDGNETWLVLGAAAMYGAFPLAYSLLL
SALYLPLVLMLAGLICRGVAFEFRFKADEAHRPFWDYVFAGGSYVATFFQGVSLGAFIDGFQVSGPSYLGGALDWLSPFS
VFTGLGLVVAYALLGATWLTMKTAGSLQARMIVCARWVTPLLLVAIAIVSLWTPLTHPAIATRWFSRPNLYYFAPVPVLI
LGASALLLHQLRGAPHAAPFFLTLIMLFLGYSGLAISLWPNIIPPGISFRAVASPPESMGFALVGTLFIIPVILTYTAWA
YHVFRGKVTSSEGYH

Sequences:

>Translated_335_residues
MGIDLPLIWVVIIGFGLMMYVIMDGFDLGIGILSPFVPDRAERDLMVNTVAPVWDGNETWLVLGAAAMYGAFPLAYSLLL
SALYLPLVLMLAGLICRGVAFEFRFKADEAHRPFWDYVFAGGSYVATFFQGVSLGAFIDGFQVSGPSYLGGALDWLSPFS
VFTGLGLVVAYALLGATWLTMKTAGSLQARMIVCARWVTPLLLVAIAIVSLWTPLTHPAIATRWFSRPNLYYFAPVPVLI
LGASALLLHQLRGAPHAAPFFLTLIMLFLGYSGLAISLWPNIIPPGISFRAVASPPESMGFALVGTLFIIPVILTYTAWA
YHVFRGKVTSSEGYH
>Mature_334_residues
GIDLPLIWVVIIGFGLMMYVIMDGFDLGIGILSPFVPDRAERDLMVNTVAPVWDGNETWLVLGAAAMYGAFPLAYSLLLS
ALYLPLVLMLAGLICRGVAFEFRFKADEAHRPFWDYVFAGGSYVATFFQGVSLGAFIDGFQVSGPSYLGGALDWLSPFSV
FTGLGLVVAYALLGATWLTMKTAGSLQARMIVCARWVTPLLLVAIAIVSLWTPLTHPAIATRWFSRPNLYYFAPVPVLIL
GASALLLHQLRGAPHAAPFFLTLIMLFLGYSGLAISLWPNIIPPGISFRAVASPPESMGFALVGTLFIIPVILTYTAWAY
HVFRGKVTSSEGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=367, Percent_Identity=28.0653950953678, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787213, Length=363, Percent_Identity=28.3746556473829, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36439; Mature: 36307

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIDLPLIWVVIIGFGLMMYVIMDGFDLGIGILSPFVPDRAERDLMVNTVAPVWDGNETW
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCE
LVLGAAAMYGAFPLAYSLLLSALYLPLVLMLAGLICRGVAFEFRFKADEAHRPFWDYVFA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHC
GGSYVATFFQGVSLGAFIDGFQVSGPSYLGGALDWLSPFSVFTGLGLVVAYALLGATWLT
CCHHHHHHHHHCHHHHHHCCEEECCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKTAGSLQARMIVCARWVTPLLLVAIAIVSLWTPLTHPAIATRWFSRPNLYYFAPVPVLI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEECCHHHHH
LGASALLLHQLRGAPHAAPFFLTLIMLFLGYSGLAISLWPNIIPPGISFRAVASPPESMG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCHHHH
FALVGTLFIIPVILTYTAWAYHVFRGKVTSSEGYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GIDLPLIWVVIIGFGLMMYVIMDGFDLGIGILSPFVPDRAERDLMVNTVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCE
LVLGAAAMYGAFPLAYSLLLSALYLPLVLMLAGLICRGVAFEFRFKADEAHRPFWDYVFA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHC
GGSYVATFFQGVSLGAFIDGFQVSGPSYLGGALDWLSPFSVFTGLGLVVAYALLGATWLT
CCHHHHHHHHHCHHHHHHCCEEECCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKTAGSLQARMIVCARWVTPLLLVAIAIVSLWTPLTHPAIATRWFSRPNLYYFAPVPVLI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEECCHHHHH
LGASALLLHQLRGAPHAAPFFLTLIMLFLGYSGLAISLWPNIIPPGISFRAVASPPESMG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCHHHH
FALVGTLFIIPVILTYTAWAYHVFRGKVTSSEGYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]