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The map label for this gene is yubD [H]

Identifier: 162146214

GI number: 162146214

Start: 393090

End: 393770

Strand: Direct

Name: yubD [H]

Synonym: GDI_0388

Alternate gene names: 162146214

Gene position: 393090-393770 (Clockwise)

Preceding gene: 162146208

Following gene: 162146215

Centisome position: 9.97

GC content: 60.65

Gene sequence:

>681_bases
ATGACCGGAAACACCAACACGGCGACCGATTTCCGCAATACCATCCTGAATGGTGACAGCGTGCAGCTTATGCGCGCGCT
CCCTCGTAATTCGGTGGATTTCATCCTGACCGACCCGCCTTACCTCGTGAATTATCAGGGCAGGGACGGGCGGAAGGTGC
GTAACGACGATAATGCGTGCTGGCTCCGGCCCGCCTTCAACCAGATGCACCGTGTCCTGAAATGGGGCGGGTTTGCTGTT
TCGTTCTATGGCTGGAACCGTATCGACCTGTTCGCCGATGCCTGGAAGGCGGCAGGGTTCCGCATGGTCGGACATATCGT
TTTTCGCAAGTCCTATTCATCCTCTTCCCGGTTTCTCCGGTATGAACACGAAAGCGCCTATCTTCTGGCCAAGGGGAATG
TAATGCCTCCGGCAAAACCCATCCCGGACGTGCTCGACATGCCCTATTCGGGCAATAAACTGCACCCGACGCAAAAGCCG
GTGGCTTCACTCCTTCCCCTGGTGGAAACCTTCTGCCCGGTGGGTGGCCTGGTTCTGGACCCGTTCGCCGGTTCGGGTTC
GTCGCTGGTGGCGGCGCAGCATCTTGGCCGTGACTGGCTGGGGATGGAACTGGACCCGGACCACGCGGCCACAGCAACCC
GCAGGCTGGCCTGGCACGGGGCGGGGAGGGCGGCGGCGTAA

Upstream 100 bases:

>100_bases
ACCCCTCCCCATCGGTCGCCCTTGCCGTTGCTACCCCGCTGCTCGCCGCGAGGCAGAGGAACAGCGGGGGCTGTTCCTCG
CGGAACAAAGGGCAAAGACC

Downstream 100 bases:

>100_bases
GCCGCCCCCTTTCTTCGCCTCACCGGGCGGCCAGAAAATCGCGCCGGTCCCGATGGACCGGCGGCGGGACGCGCCGTTAC
CCGGCGCGCGCGGCGCTCGC

Product: modification methylase

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTGNTNTATDFRNTILNGDSVQLMRALPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNACWLRPAFNQMHRVLKWGGFAV
SFYGWNRIDLFADAWKAAGFRMVGHIVFRKSYSSSSRFLRYEHESAYLLAKGNVMPPAKPIPDVLDMPYSGNKLHPTQKP
VASLLPLVETFCPVGGLVLDPFAGSGSSLVAAQHLGRDWLGMELDPDHAATATRRLAWHGAGRAAA

Sequences:

>Translated_226_residues
MTGNTNTATDFRNTILNGDSVQLMRALPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNACWLRPAFNQMHRVLKWGGFAV
SFYGWNRIDLFADAWKAAGFRMVGHIVFRKSYSSSSRFLRYEHESAYLLAKGNVMPPAKPIPDVLDMPYSGNKLHPTQKP
VASLLPLVETFCPVGGLVLDPFAGSGSSLVAAQHLGRDWLGMELDPDHAATATRRLAWHGAGRAAA
>Mature_225_residues
TGNTNTATDFRNTILNGDSVQLMRALPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNACWLRPAFNQMHRVLKWGGFAVS
FYGWNRIDLFADAWKAAGFRMVGHIVFRKSYSSSSRFLRYEHESAYLLAKGNVMPPAKPIPDVLDMPYSGNKLHPTQKPV
ASLLPLVETFCPVGGLVLDPFAGSGSSLVAAQHLGRDWLGMELDPDHAATATRRLAWHGAGRAAA

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 25047; Mature: 24916

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGNTNTATDFRNTILNGDSVQLMRALPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNAC
CCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCEE
WLRPAFNQMHRVLKWGGFAVSFYGWNRIDLFADAWKAAGFRMVGHIVFRKSYSSSSRFLR
EECHHHHHHHHHHHHCCEEEEEECCCEEHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEE
YEHESAYLLAKGNVMPPAKPIPDVLDMPYSGNKLHPTQKPVASLLPLVETFCPVGGLVLD
EECCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEC
PFAGSGSSLVAAQHLGRDWLGMELDPDHAATATRRLAWHGAGRAAA
CCCCCCCCCHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TGNTNTATDFRNTILNGDSVQLMRALPRNSVDFILTDPPYLVNYQGRDGRKVRNDDNAC
CCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCEE
WLRPAFNQMHRVLKWGGFAVSFYGWNRIDLFADAWKAAGFRMVGHIVFRKSYSSSSRFLR
EECHHHHHHHHHHHHCCEEEEEECCCEEHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEE
YEHESAYLLAKGNVMPPAKPIPDVLDMPYSGNKLHPTQKPVASLLPLVETFCPVGGLVLD
EECCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEC
PFAGSGSSLVAAQHLGRDWLGMELDPDHAATATRRLAWHGAGRAAA
CCCCCCCCCHHHHHCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]