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The map label for this gene is 162146002

Identifier: 162146002

GI number: 162146002

Start: 179745

End: 180551

Strand: Reverse

Name: 162146002

Synonym: GDI_0170

Alternate gene names: NA

Gene position: 180551-179745 (Counterclockwise)

Preceding gene: 162146003

Following gene: 162145998

Centisome position: 4.58

GC content: 67.91

Gene sequence:

>807_bases
ATGGCGGACAGACCATCCTGGACGGGCTATCTGAAGGTCTCGCTGGTCACCTGTCCCGTGACCATGATGCCGGCGACGAC
CGGCAGCGAGACGGTTCGTTTCCACACCATCAACCGGCGGACTGGCCACCGCGTCGTCAGCCGCTATGTCGATGCGCAGA
GCGGCGCGCCCGTGGCGGACGATGAGCAGGTGCTGGGCTATCCGCGCGACGACGACCATTATGTGCTGCTGGAGGACGAG
GAGCTGGAATCCGTCGCCCTGGACAGCACTCGTACGATCGACATCGAAAGTTTCGTGCCGGCGGGCAGCATCGGCTGGGT
CTGGTATGACGCGCCGCATTTCCTGATGCCGGACGATACCATCGGCGTGGAGGCCTTCGCCGTCATCCGGGCCGCGATGG
AGGCGGCCGGGATGGTCGGCATCGCGCGCCTGGTGCTGTACCGGCGCGAACGCGCGGTGCTGCTGGAACCGCGCGGCAAG
GGGATCGTGCTGTGGACCCTGCATGACGGAAACGCGGTCCGCAATGGCGGCCACCCCGCCGCACGGACCCGGCCGGCGTC
CGAGGCCGAGTCCGCCGACAGCCCGGAAATGAAGCTGCTGACGGCATTGATCGACCGGCAGACGCAGCCCTGGGACCCGG
AGATGGTCCGCGACCCGGTGCAGGAACGGCTGCTGGACATCATCGCGGCCAGGCAGAAGGGCCGGAAGCGGGCGCCGGCC
CGCGAGGCCGCGAAACCGAAGACCGGCAATGTGGTCAGTATCCTGGATGCGTTGCGGGCCAGCCTGGCGCAGGATGGAAC
CTCCTGA

Upstream 100 bases:

>100_bases
GGAACGACCGGATGATACGGGAGTTGCACGGCCCGCGCGGGGGAACCGCCGGCGCGGGCGGGGCGTTCGGCCGGCATAAA
GGCATAACGGGCGCGTCGCC

Downstream 100 bases:

>100_bases
CGGAGCGGCCCTTAACGGAGCGGCCGGGCCGCGTCACGGATCTCCGCCCATGGGTCCGCGACCGCCAATCGGGCGCCGAT
CGTCCCGATGGTGAAGTGCG

Product: DNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MADRPSWTGYLKVSLVTCPVTMMPATTGSETVRFHTINRRTGHRVVSRYVDAQSGAPVADDEQVLGYPRDDDHYVLLEDE
ELESVALDSTRTIDIESFVPAGSIGWVWYDAPHFLMPDDTIGVEAFAVIRAAMEAAGMVGIARLVLYRRERAVLLEPRGK
GIVLWTLHDGNAVRNGGHPAARTRPASEAESADSPEMKLLTALIDRQTQPWDPEMVRDPVQERLLDIIAARQKGRKRAPA
REAAKPKTGNVVSILDALRASLAQDGTS

Sequences:

>Translated_268_residues
MADRPSWTGYLKVSLVTCPVTMMPATTGSETVRFHTINRRTGHRVVSRYVDAQSGAPVADDEQVLGYPRDDDHYVLLEDE
ELESVALDSTRTIDIESFVPAGSIGWVWYDAPHFLMPDDTIGVEAFAVIRAAMEAAGMVGIARLVLYRRERAVLLEPRGK
GIVLWTLHDGNAVRNGGHPAARTRPASEAESADSPEMKLLTALIDRQTQPWDPEMVRDPVQERLLDIIAARQKGRKRAPA
REAAKPKTGNVVSILDALRASLAQDGTS
>Mature_267_residues
ADRPSWTGYLKVSLVTCPVTMMPATTGSETVRFHTINRRTGHRVVSRYVDAQSGAPVADDEQVLGYPRDDDHYVLLEDEE
LESVALDSTRTIDIESFVPAGSIGWVWYDAPHFLMPDDTIGVEAFAVIRAAMEAAGMVGIARLVLYRRERAVLLEPRGKG
IVLWTLHDGNAVRNGGHPAARTRPASEAESADSPEMKLLTALIDRQTQPWDPEMVRDPVQERLLDIIAARQKGRKRAPAR
EAAKPKTGNVVSILDALRASLAQDGTS

Specific function: Could be involved in DNA repair

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y170_GLUDA (A9H271)

Other databases:

- EMBL:   CP001189
- EMBL:   AM889285
- RefSeq:   YP_001600460.1
- RefSeq:   YP_002276610.1
- ProteinModelPortal:   A9H271
- GeneID:   5792298
- GeneID:   6975669
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_2240
- HOGENOM:   HBG492008
- OMA:   FWKGYLK
- ProtClustDB:   CLSK865066
- HAMAP:   MF_01875
- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194
- PIRSF:   PIRSF006493
- TIGRFAMs:   TIGR02772

Pfam domain/function: PF02735 Ku; SSF100939 SPOC-like

EC number: NA

Molecular weight: Translated: 29464; Mature: 29333

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRPSWTGYLKVSLVTCPVTMMPATTGSETVRFHTINRRTGHRVVSRYVDAQSGAPVAD
CCCCCCCCEEEEEEEEECCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCC
DEQVLGYPRDDDHYVLLEDEELESVALDSTRTIDIESFVPAGSIGWVWYDAPHFLMPDDT
CHHHCCCCCCCCCEEEEECCCCHHHCCCCCEEEEHHHCCCCCCCEEEEECCCCEECCCCC
IGVEAFAVIRAAMEAAGMVGIARLVLYRRERAVLLEPRGKGIVLWTLHDGNAVRNGGHPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCEECCCCCCC
ARTRPASEAESADSPEMKLLTALIDRQTQPWDPEMVRDPVQERLLDIIAARQKGRKRAPA
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
REAAKPKTGNVVSILDALRASLAQDGTS
HHHCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADRPSWTGYLKVSLVTCPVTMMPATTGSETVRFHTINRRTGHRVVSRYVDAQSGAPVAD
CCCCCCCEEEEEEEEECCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCC
DEQVLGYPRDDDHYVLLEDEELESVALDSTRTIDIESFVPAGSIGWVWYDAPHFLMPDDT
CHHHCCCCCCCCCEEEEECCCCHHHCCCCCEEEEHHHCCCCCCCEEEEECCCCEECCCCC
IGVEAFAVIRAAMEAAGMVGIARLVLYRRERAVLLEPRGKGIVLWTLHDGNAVRNGGHPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCEECCCCCCC
ARTRPASEAESADSPEMKLLTALIDRQTQPWDPEMVRDPVQERLLDIIAARQKGRKRAPA
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
REAAKPKTGNVVSILDALRASLAQDGTS
HHHCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA