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The map label for this gene is traF

Identifier: 162145946

GI number: 162145946

Start: 117026

End: 117568

Strand: Direct

Name: traF

Synonym: GDI_0110

Alternate gene names: NA

Gene position: 117026-117568 (Clockwise)

Preceding gene: 162145945

Following gene: 162145947

Centisome position: 2.97

GC content: 66.67

Gene sequence:

>543_bases
ATGACGCGCTTCGGCTGGTTCTTCACCACGTATTTCGCAGTCCTCGGTGCCGGCACGTCATTGGCGATCCATCCGGCGCC
CCGCCTGATCTGGAATGCCACCGCCAGCACGCCGGTCGGGCTGTATCGCCTGCAATCGGCCCGCTCATTGCATGTCGGCG
ACCTGATCGCGATCCGGCCACCCTCCGACATTGCCACGATGCTGGCGCACGGCGGCTATCTGCCGCTCGGTGTGCCACTG
CTCAAGCCGGTTGCGGCACTGCCGGGGCAATTGGTCTGCCGGATCGGCACCGTCGTTTCGGTCGATGGCACGGTGCTTGG
CGATGCGTTGGCCCGCGATCATCGCGGCCGTCCGCTGCCGGTCTGGCAGGGATGCCGGCACGTCCTGCCCGGGCAGATTT
TCGTCATGAACCCGGCGGTCCCGACCAGTCTCGACGGCCGCTATTTCGGCGTCCTGCCGGTCGATGCAGTGCTCGGCCGT
GCACAGCCGCTGTGGCTCGTGCCGTCATCGATGTCTCCCACCCCCAAGCAGAAACGAGGCTGA

Upstream 100 bases:

>100_bases
AGCATTGGCGGCATCTGCACAATCGGATGCTCGCCGGGCAGGCACCACGCCCCTACACGCGCGACCGCCATGATGCCTGG
TTGCGCCGGAGGGCGGTATC

Downstream 100 bases:

>100_bases
CATGGCCCAGATTGGAACTTTCACGCGCACGTCTGACGGCTTCGCCGGGCGCCTGCGCACGCTCGCCCTCGACGTCGAAC
TGACGATCGTGCTGGCGACA

Product: conjugal transfer protein traF

Products: NA

Alternate protein names: Conjugal Transfer Protein TraF; TraF Peptidase; Conjugal Transfer TRAF Transmembrane Protein; Conjugative Transfer Signal Peptidase TraF; Peptidase; Type IV Secretory Pathway Protease TraF-Like Protein; Plasmid Transfer Protein TraF; Type IV Secretory Pathway Protease TraF; Peptidase S; Raf Peptidase. Serine Peptidase. Merops Family; Conjugal Transfer Protein Traf; Conjugal Transfer TraF Transmembrane Protein; Plasmid Transfer Protein Traf; Traf Peptidase Serine Peptidase Merops Family; Transmembrane Anchor Conjugal Transfer Protein; RaF Peptidase. Serine Peptidase. MEROPS Family; TraF Peptidase Serine Peptidase MEROPS Family

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MTRFGWFFTTYFAVLGAGTSLAIHPAPRLIWNATASTPVGLYRLQSARSLHVGDLIAIRPPSDIATMLAHGGYLPLGVPL
LKPVAALPGQLVCRIGTVVSVDGTVLGDALARDHRGRPLPVWQGCRHVLPGQIFVMNPAVPTSLDGRYFGVLPVDAVLGR
AQPLWLVPSSMSPTPKQKRG

Sequences:

>Translated_180_residues
MTRFGWFFTTYFAVLGAGTSLAIHPAPRLIWNATASTPVGLYRLQSARSLHVGDLIAIRPPSDIATMLAHGGYLPLGVPL
LKPVAALPGQLVCRIGTVVSVDGTVLGDALARDHRGRPLPVWQGCRHVLPGQIFVMNPAVPTSLDGRYFGVLPVDAVLGR
AQPLWLVPSSMSPTPKQKRG
>Mature_179_residues
TRFGWFFTTYFAVLGAGTSLAIHPAPRLIWNATASTPVGLYRLQSARSLHVGDLIAIRPPSDIATMLAHGGYLPLGVPLL
KPVAALPGQLVCRIGTVVSVDGTVLGDALARDHRGRPLPVWQGCRHVLPGQIFVMNPAVPTSLDGRYFGVLPVDAVLGRA
QPLWLVPSSMSPTPKQKRG

Specific function: Unknown

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19233; Mature: 19102

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFGWFFTTYFAVLGAGTSLAIHPAPRLIWNATASTPVGLYRLQSARSLHVGDLIAIRP
CCCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCHHHEEECCCCCCCCCCEEEECC
PSDIATMLAHGGYLPLGVPLLKPVAALPGQLVCRIGTVVSVDGTVLGDALARDHRGRPLP
CHHHHHHHHCCCCCCCCCHHHHHHHHCCHHEEEHHCCEEEECCHHHHHHHHHHCCCCCCC
VWQGCRHVLPGQIFVMNPAVPTSLDGRYFGVLPVDAVLGRAQPLWLVPSSMSPTPKQKRG
HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEHHHHHCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
TRFGWFFTTYFAVLGAGTSLAIHPAPRLIWNATASTPVGLYRLQSARSLHVGDLIAIRP
CCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCHHHEEECCCCCCCCCCEEEECC
PSDIATMLAHGGYLPLGVPLLKPVAALPGQLVCRIGTVVSVDGTVLGDALARDHRGRPLP
CHHHHHHHHCCCCCCCCCHHHHHHHHCCHHEEEHHCCEEEECCHHHHHHHHHHCCCCCCC
VWQGCRHVLPGQIFVMNPAVPTSLDGRYFGVLPVDAVLGRAQPLWLVPSSMSPTPKQKRG
HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEHHHHHCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA