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The map label for this gene is xynB [H]

Identifier: 162145878

GI number: 162145878

Start: 41637

End: 42653

Strand: Direct

Name: xynB [H]

Synonym: GDI_0039

Alternate gene names: 162145878

Gene position: 41637-42653 (Clockwise)

Preceding gene: 162145876

Following gene: 162145890

Centisome position: 1.06

GC content: 71.48

Gene sequence:

>1017_bases
ATGGCGCCGGGCACACCGGCCGCAGTGGGGAAGCGAGGGGTGATGGACAGGCGTACTTTCGTGGCGGCCACCGCGGCGCT
GGCCGGGGGCGCGTTTCCCGGATGCGCGCGGACGCAACCCTTCCGGCCCCGCCACCGCGGGGCCGGTCATGATGACGACC
GGCCGGCCCCGCCGTCGGGCCTTGCGATCTGGCCCGGGCCGCCGCCGGGTGGGGGCGGCCCGACCGGGCGGGAACATGTC
TCGGCCTCCGGTGCCGTCACGCGGGTCGCCATTCCTCGGTTGACCGTGCTGCGCCCCGCCCGTCCCAACGGCGCCGCCAT
GCTGATCGCCGCCGGTGGCGGCTACAGGCGGATCGAGGTGCAGAAGGAAGCCATGCCGGCCGCCGGATGGCTGGCCTCGA
TCGGTGTGACGGCCTTCGTCCTGACCTATCGCCTGCCCCCCGAGGACTGGGCGGCCGGCAGCCTGGCCCCGTTCCAGGAT
GCCGGGCGCGCCATCCGGACGATGCGTGGTCAGGCCGGTCATCTCGGTATCGATCCCCGCAGGATCGGCGTACTGGGCTT
TTCATCCGGCGGTCATCTGCTGGGAATGCAGACGGCCTGTGCCGAACGGCTCGACTACGCGCCCATCGACGCCCTGGACC
GGGAATCCGGCCGCCCGGATCTGACGATGCTGGTCTACCCGATCGTGACGCTGGAGCCGCCATATCAGCACACATCCAGC
CGGCGCGTGCTGATCGGCGATCATCCGACCCCAGTGGAGAGCGCGCGCTGGTCGGTACAGACCCATGTCCATTCCGGGCT
GGCGCCCTTCTTTCTGGCGCAGGCGGCGGACGACCCGGTCTCGAACCCGCAGAACACGGCGATCTTGCAGGCGGCCTGCG
AAAGCGCGGGCGTGCGGGTGGAGCGGCACCTGTTTCCCACCGGGGGGCACGGTTTCGGCCTGGGCGCACCCGGGACGCAG
ACCGTTGAATGGCCGGCGATGGCCGAAAGCTGGATGCGGCGGGAACGGTTCGTCTGA

Upstream 100 bases:

>100_bases
GGCGCGGCGGGCGGCGGGTCTCATCAGGGTGGCGACGTTGGGTGCGCCCGCCCGTCAGGTCCAATCGTTTGTTGTGATCA
CGTGATAAAGGCTGCTTATG

Downstream 100 bases:

>100_bases
TCGCGGGGGCGTGCGTCATTCCCGGACCGGGCGACAGGCGGCGTGTGTTCAGACGGCCGCGAAGACGTCGCCGGCCTGCA
GGCGGCCGCAGACGTCCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MAPGTPAAVGKRGVMDRRTFVAATAALAGGAFPGCARTQPFRPRHRGAGHDDDRPAPPSGLAIWPGPPPGGGGPTGREHV
SASGAVTRVAIPRLTVLRPARPNGAAMLIAAGGGYRRIEVQKEAMPAAGWLASIGVTAFVLTYRLPPEDWAAGSLAPFQD
AGRAIRTMRGQAGHLGIDPRRIGVLGFSSGGHLLGMQTACAERLDYAPIDALDRESGRPDLTMLVYPIVTLEPPYQHTSS
RRVLIGDHPTPVESARWSVQTHVHSGLAPFFLAQAADDPVSNPQNTAILQAACESAGVRVERHLFPTGGHGFGLGAPGTQ
TVEWPAMAESWMRRERFV

Sequences:

>Translated_338_residues
MAPGTPAAVGKRGVMDRRTFVAATAALAGGAFPGCARTQPFRPRHRGAGHDDDRPAPPSGLAIWPGPPPGGGGPTGREHV
SASGAVTRVAIPRLTVLRPARPNGAAMLIAAGGGYRRIEVQKEAMPAAGWLASIGVTAFVLTYRLPPEDWAAGSLAPFQD
AGRAIRTMRGQAGHLGIDPRRIGVLGFSSGGHLLGMQTACAERLDYAPIDALDRESGRPDLTMLVYPIVTLEPPYQHTSS
RRVLIGDHPTPVESARWSVQTHVHSGLAPFFLAQAADDPVSNPQNTAILQAACESAGVRVERHLFPTGGHGFGLGAPGTQ
TVEWPAMAESWMRRERFV
>Mature_337_residues
APGTPAAVGKRGVMDRRTFVAATAALAGGAFPGCARTQPFRPRHRGAGHDDDRPAPPSGLAIWPGPPPGGGGPTGREHVS
ASGAVTRVAIPRLTVLRPARPNGAAMLIAAGGGYRRIEVQKEAMPAAGWLASIGVTAFVLTYRLPPEDWAAGSLAPFQDA
GRAIRTMRGQAGHLGIDPRRIGVLGFSSGGHLLGMQTACAERLDYAPIDALDRESGRPDLTMLVYPIVTLEPPYQHTSSR
RVLIGDHPTPVESARWSVQTHVHSGLAPFFLAQAADDPVSNPQNTAILQAACESAGVRVERHLFPTGGHGFGLGAPGTQT
VEWPAMAESWMRRERFV

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 35645; Mature: 35514

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPGTPAAVGKRGVMDRRTFVAATAALAGGAFPGCARTQPFRPRHRGAGHDDDRPAPPSG
CCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
LAIWPGPPPGGGGPTGREHVSASGAVTRVAIPRLTVLRPARPNGAAMLIAAGGGYRRIEV
EEECCCCCCCCCCCCCHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEEECCCCEEEEEE
QKEAMPAAGWLASIGVTAFVLTYRLPPEDWAAGSLAPFQDAGRAIRTMRGQAGHLGIDPR
HHHHCCHHHHHHHHHHEEEEEEEECCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
RIGVLGFSSGGHLLGMQTACAERLDYAPIDALDRESGRPDLTMLVYPIVTLEPPYQHTSS
EEEEEEECCCCCEEEHHHHHHHHCCCCCCCHHCCCCCCCCEEEEEEEEEEECCCCCCCCC
RRVLIGDHPTPVESARWSVQTHVHSGLAPFFLAQAADDPVSNPQNTAILQAACESAGVRV
CEEEECCCCCCHHHHCEEEHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEE
ERHLFPTGGHGFGLGAPGTQTVEWPAMAESWMRRERFV
EEEECCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCC
>Mature Secondary Structure 
APGTPAAVGKRGVMDRRTFVAATAALAGGAFPGCARTQPFRPRHRGAGHDDDRPAPPSG
CCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
LAIWPGPPPGGGGPTGREHVSASGAVTRVAIPRLTVLRPARPNGAAMLIAAGGGYRRIEV
EEECCCCCCCCCCCCCHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEEECCCCEEEEEE
QKEAMPAAGWLASIGVTAFVLTYRLPPEDWAAGSLAPFQDAGRAIRTMRGQAGHLGIDPR
HHHHCCHHHHHHHHHHEEEEEEEECCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
RIGVLGFSSGGHLLGMQTACAERLDYAPIDALDRESGRPDLTMLVYPIVTLEPPYQHTSS
EEEEEEECCCCCEEEHHHHHHHHCCCCCCCHHCCCCCCCCEEEEEEEEEEECCCCCCCCC
RRVLIGDHPTPVESARWSVQTHVHSGLAPFFLAQAADDPVSNPQNTAILQAACESAGVRV
CEEEECCCCCCHHHHCEEEHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEE
ERHLFPTGGHGFGLGAPGTQTVEWPAMAESWMRRERFV
EEEECCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]