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The map label for this gene is rimN [H]

Identifier: 161871012

GI number: 161871012

Start: 2140312

End: 2140881

Strand: Reverse

Name: rimN [H]

Synonym: NMCC_2108

Alternate gene names: 161871012

Gene position: 2140881-2140312 (Counterclockwise)

Preceding gene: 161871013

Following gene: 161871010

Centisome position: 99.42

GC content: 49.65

Gene sequence:

>570_bases
ATGTTATTTCCGAGAATTATCGCAGCATCAGCGCAACGTAAGTTAAGCGTTTATTTGAAAAAAGGCGGTTTGGTCGCTTA
TCCGACCGAATCTTGTTATGGCTTGGGGTGTCTTCCGACATTAGCCAAAGCACTCGGTAAGTTGGCGCATTTGAAAAAAA
GACCGCAACACAAGGGTATGATTGTCATCGGGAATCAATTTGAACAATTGCAGCCTTTACTTCAAATGCCGTCTGAAAAT
CTTCAGGATATGCTTAGAAAAGAATGGCCTGCCCCTAAAACGTTCCTATTATCCGCCAAATCCTGTGTCTTACCTGAGTT
GCGCGGGAAACAGCGCAGCAAGTTGGCGGTCAGGGTTCCCGCCCATGTAGGTGCGCGCCGCTTGTGTCAGGCTTTGCAAA
CGCCTTTGGTCTCGACTTCGTGCAACCGCGCAGGCAAACGCGCGTGTCGGACGGAGAGGGAAGTCAGAAGGCAATTCGGA
CGCGATGTGTGGATTGTTGGTGGGAGAATCGGCAGGCAGAAATCGCCGAGTCAGATTATTGACGGGGAAACAGGTAAACG
TTTGCGTTAG

Upstream 100 bases:

>100_bases
ATTTGGGTAAAATTAGGCGGTATTTGGGGCGAAAATAGACGAAAACCTGTGTTTGGGTTTCGGCTGTCGGGAGGGAAAGG
AATTTTGCAAAGGTCTCATT

Downstream 100 bases:

>100_bases
ATATGGGTACTTGAATGAAAACTTTTTTGCATACACAAAGAAAAAATTTTGGGGCTGTACTAGATTAGCCCTAAATCCCA
CACCAATCCCGCAGGATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSEN
LQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQFG
RDVWIVGGRIGRQKSPSQIIDGETGKRLR

Sequences:

>Translated_189_residues
MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSEN
LQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQFG
RDVWIVGGRIGRQKSPSQIIDGETGKRLR
>Mature_189_residues
MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSEN
LQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQFG
RDVWIVGGRIGRQKSPSQIIDGETGKRLR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=173, Percent_Identity=41.0404624277457, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI87081864, Length=166, Percent_Identity=25.3012048192771, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21106; Mature: 21106

Theoretical pI: Translated: 11.50; Mature: 11.50

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM
CCCCHHHHHHHHHHHHEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE
IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVP
EEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHEEECCHHHHCHHHCCCCCCCEEEECC
AHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQFGRDVWIVGGRIGRQKSPSQII
HHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHC
DGETGKRLR
CCCCCCCCC
>Mature Secondary Structure
MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM
CCCCHHHHHHHHHHHHEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE
IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRVP
EEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHEEECCHHHHCHHHCCCCCCCEEEECC
AHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQFGRDVWIVGGRIGRQKSPSQII
HHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHC
DGETGKRLR
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA