Click here to switch to the map view.

The map label for this gene is slyD [H]

Identifier: 161870382

GI number: 161870382

Start: 1450641

End: 1451123

Strand: Reverse

Name: slyD [H]

Synonym: NMCC_1428

Alternate gene names: 161870382

Gene position: 1451123-1450641 (Counterclockwise)

Preceding gene: 161870386

Following gene: 161870381

Centisome position: 67.39

GC content: 54.66

Gene sequence:

>483_bases
ATGGCTATCGTGAAAAATTCCGTGGTTTCGCTGCATTATGAGATGTATGATGCCAACAATCAGCTTTTGGACAAAACCGA
AGAACCGATTGCGTATCTGCACGGCGGTTACGACGGCATTTTCCCTTTGGTGGAAGAGGCGTTGCACGGTAAGGATGCCG
GCGATACGGTCGATGTGGCGCTGTCGCCCGACGATGCGTTCGGCGAGCAGGATCCGGAGTTGGTCCGTATCGAAGATGCG
GGCGTGTTCCCTGTTGAAGTCGAAGTCGGCATGATGTTTGAAGCCGACGATCCTGAAACTGGCGATGTTGTCGTCTATCG
TGTAACCGATGTTGCCGACGGCAAGGCGGTGGTGGACGGCAACCATCCTTTGGCAGGCATGAAAATCCGCTTTAAGGCTA
CAGTTGAAAGCGTGCGCGATGCATCCGATGAGGAAATCGCACACGGTCATGTCCACGGCCCGCACGGTCATCACCACCAC
TGA

Upstream 100 bases:

>100_bases
TGTGCTGTACAGTTTATGAACAGGTTAACGGTAATCGGCCGGCGCGGCGGTTGTGTTAGAATGCGCCTGTAATTAATCTG
CTGTTCCTGAAAGGACAAAT

Downstream 100 bases:

>100_bases
TTGCCGGCAGCTTGGAGGTATCTGATGCCGTCTGAAAAGGGTTTGTTCCGTTTCAGACGGCATTTTGTTTGATGGATGGA
GAAGGTATGTCGGTTGGGCA

Product: FKBP-type peptidyl-prolyl cis-trans isomerase SlyD

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLVEEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDA
GVFPVEVEVGMMFEADDPETGDVVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH

Sequences:

>Translated_160_residues
MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLVEEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDA
GVFPVEVEVGMMFEADDPETGDVVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
>Mature_159_residues
AIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLVEEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDAG
VFPVEVEVGMMFEADDPETGDVVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=151, Percent_Identity=39.0728476821192, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 17405; Mature: 17274

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLVEEALHGKDAGDTVDVA
CCEECCCEEEEEEEEECCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEE
LSPDDAFGEQDPELVRIEDAGVFPVEVEVGMMFEADDPETGDVVVYRVTDVADGKAVVDG
ECCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEC
NHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
CCCEECEEEEEEEHHHHHHCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
AIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLVEEALHGKDAGDTVDVA
CEECCCEEEEEEEEECCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEE
LSPDDAFGEQDPELVRIEDAGVFPVEVEVGMMFEADDPETGDVVVYRVTDVADGKAVVDG
ECCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEC
NHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
CCCEECEEEEEEEHHHHHHCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]