BacMap

Definition	Neisseria meningitidis 053442, complete genome.
Accession	NC_010120
Length	2,153,416

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The map label for this gene is ydfG [C]

Identifier: 161869834

GI number: 161869834

Start: 867652

End: 868473

Strand: Direct

Name: ydfG [C]

Synonym: NMCC_0865

Alternate gene names: 161869834

Gene position: 867652-868473 (Clockwise)

Preceding gene: 161869832

Following gene: 161869836

Centisome position: 40.29

GC content: 53.53

Gene sequence:

>822_bases
ATGGCTGTTTTAATTACCGGTGCTTCGGCAGGATTCGGCGAAGCGATGTGCCGTGCGTTTGTCGGGGCGGGATACCGCGT
TATCGGTGCGGCGCGTCGTGCGGACAGGCTTCAGGCCTTGGCGGATGAATTGGGTGCTTTGTTTTACCCTTTGGAAATGG
ACGTGTCGCGCCGCGAGTCGGTGGAAAACGCCTTAAACGGCATCCCTGATGAATTTTCCGACATCGACTGCCTCATCAAC
AATGCCGGGCTGGCTTTGGGTCTGGACACGGCGGACAAGGCGGATTTTGAAGATTGGGAAACGATGATTCAAACCAATGT
TTTGGGTTTGACGTTCCTGACGCGCAAAATTTTGCCGCAAATGGTGGAACGCGGCGGCGGTTATGTGATGAATTTGGGTT
CGATTGCAGGCAATTATGCTTATGCCGGCAGCAACGTTTACGGGGCGACCAAGGCGTTTGTGCGCCAGTTCAGCCTGAAT
TTGCGCGCGGAGTTGGCGGATAAGAACATCCGCGTTACCAATATCGAGCCGGGTTTGTGCGGCAATACGGAGTTTTCCAA
CGTGCGCTTCAAAGGCGATGACGAGAAGGCAGCAGGCGTGTATGAGGGTGTGGAATTTATCCGCCCCGAAGATATTGCGG
AAACCGCATTGTGGCTGTACCGCCGGCCGGCGCATATGAATGTGAACACGATTGAAATTATGCCCGTGGCGCAGACTTTT
GCAGGAATGAAGGTCATAAAAACAGCCGTGCCCGAAGTGCGGGAAGACTTTGAAAAACAGAGTATGTCGCTGTTTTCCCG
CATCAGGTCCTGGTTCAAATGA

Upstream 100 bases:

>100_bases
TGGTGGTATGGTTGTTGTCATTTTCAGCCGGCGCGATGCCGTCTGAAGAGCGTTATGATACCTGAAACAGGTTTGGGAAA
CGAGAAAGAAAGGAAAAACA

Downstream 100 bases:

>100_bases
TGCGGAATGCCGTCTGAAGACAGTTTCAGACGGCATTTTTACGGGTATTTTTACGGAGTAGGCAATAAGCCCGACAATTT
GGGGTTGCCTTCTTTCGGAA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MAVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADELGALFYPLEMDVSRRESVENALNGIPDEFSDIDCLIN
NAGLALGLDTADKADFEDWETMIQTNVLGLTFLTRKILPQMVERGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLN
LRAELADKNIRVTNIEPGLCGNTEFSNVRFKGDDEKAAGVYEGVEFIRPEDIAETALWLYRRPAHMNVNTIEIMPVAQTF
AGMKVIKTAVPEVREDFEKQSMSLFSRIRSWFK

Sequences:

>Translated_273_residues
MAVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADELGALFYPLEMDVSRRESVENALNGIPDEFSDIDCLIN
NAGLALGLDTADKADFEDWETMIQTNVLGLTFLTRKILPQMVERGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLN
LRAELADKNIRVTNIEPGLCGNTEFSNVRFKGDDEKAAGVYEGVEFIRPEDIAETALWLYRRPAHMNVNTIEIMPVAQTF
AGMKVIKTAVPEVREDFEKQSMSLFSRIRSWFK
>Mature_272_residues
AVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADELGALFYPLEMDVSRRESVENALNGIPDEFSDIDCLINN
AGLALGLDTADKADFEDWETMIQTNVLGLTFLTRKILPQMVERGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLNL
RAELADKNIRVTNIEPGLCGNTEFSNVRFKGDDEKAAGVYEGVEFIRPEDIAETALWLYRRPAHMNVNTIEIMPVAQTFA
GMKVIKTAVPEVREDFEKQSMSLFSRIRSWFK

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=35.3658536585366, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=34.0314136125654, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI40254992, Length=175, Percent_Identity=31.4285714285714, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI20149619, Length=185, Percent_Identity=30.8108108108108, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI40548397, Length=179, Percent_Identity=31.2849162011173, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI214010158, Length=179, Percent_Identity=31.2849162011173, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI214010156, Length=179, Percent_Identity=31.2849162011173, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI22758144, Length=179, Percent_Identity=31.2849162011173, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI150247226, Length=190, Percent_Identity=31.0526315789474, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI19923817, Length=184, Percent_Identity=25.5434782608696, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI22507405, Length=178, Percent_Identity=31.4606741573034, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI19743808, Length=178, Percent_Identity=28.6516853932584, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI157739938, Length=183, Percent_Identity=27.3224043715847, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI32483357, Length=216, Percent_Identity=28.2407407407407, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7705855, Length=195, Percent_Identity=27.6923076923077, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI4504503, Length=184, Percent_Identity=28.804347826087, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=166, Percent_Identity=28.3132530120482, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI7657478, Length=183, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI59889578, Length=162, Percent_Identity=29.6296296296296, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI10190704, Length=185, Percent_Identity=29.1891891891892, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4758504, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787820, Length=245, Percent_Identity=56.3265306122449, Blast_Score=298, Evalue=4e-82,
Organism=Escherichia coli, GI1787335, Length=198, Percent_Identity=32.8282828282828, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1786812, Length=245, Percent_Identity=29.3877551020408, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082100, Length=182, Percent_Identity=34.0659340659341, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786701, Length=182, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790717, Length=179, Percent_Identity=25.6983240223464, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787905, Length=224, Percent_Identity=26.3392857142857, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789208, Length=215, Percent_Identity=24.1860465116279, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367175, Length=188, Percent_Identity=27.1276595744681, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=242, Percent_Identity=28.5123966942149, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17544670, Length=244, Percent_Identity=27.8688524590164, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25152911, Length=198, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=178, Percent_Identity=30.3370786516854, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=237, Percent_Identity=26.5822784810127, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=225, Percent_Identity=25.7777777777778, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=185, Percent_Identity=27.5675675675676, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=189, Percent_Identity=27.5132275132275, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=185, Percent_Identity=27.5675675675676, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=179, Percent_Identity=31.8435754189944, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=245, Percent_Identity=26.530612244898, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=203, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=230, Percent_Identity=27.3913043478261, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=240, Percent_Identity=25, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=188, Percent_Identity=28.7234042553192, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=202, Percent_Identity=28.2178217821782, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=188, Percent_Identity=28.7234042553192, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=185, Percent_Identity=27.5675675675676, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=187, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=244, Percent_Identity=36.4754098360656, Blast_Score=149, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6322067, Length=177, Percent_Identity=29.3785310734463, Blast_Score=73, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=197, Percent_Identity=25.8883248730964, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322226, Length=189, Percent_Identity=23.2804232804233, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI281364494, Length=251, Percent_Identity=33.0677290836653, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI116007236, Length=258, Percent_Identity=30.6201550387597, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21358495, Length=223, Percent_Identity=34.9775784753363, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24648693, Length=252, Percent_Identity=29.3650793650794, Blast_Score=104, Evalue=8e-23,
Organism=Drosophila melanogaster, GI21355889, Length=252, Percent_Identity=29.3650793650794, Blast_Score=104, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=29.6, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI28571387, Length=250, Percent_Identity=32, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24663911, Length=251, Percent_Identity=26.6932270916335, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24643142, Length=175, Percent_Identity=31.4285714285714, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI116007234, Length=251, Percent_Identity=29.8804780876494, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24641232, Length=255, Percent_Identity=29.8039215686275, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=31.1827956989247, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=31.1827956989247, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI116007238, Length=188, Percent_Identity=32.4468085106383, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI28571526, Length=224, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI23397609, Length=181, Percent_Identity=31.4917127071823, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=181, Percent_Identity=28.1767955801105, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI28574402, Length=187, Percent_Identity=31.0160427807487, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24584744, Length=187, Percent_Identity=31.0160427807487, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24648944, Length=237, Percent_Identity=27.8481012658228, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=25.6410256410256, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24644339, Length=224, Percent_Identity=26.3392857142857, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007232, Length=174, Percent_Identity=31.0344827586207, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI221510726, Length=141, Percent_Identity=34.0425531914894, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24639444, Length=239, Percent_Identity=28.8702928870293, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24580925, Length=214, Percent_Identity=25.7009345794392, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17737361, Length=188, Percent_Identity=28.1914893617021, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30093; Mature: 29961

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADELGALFYPLEMDVSRRES
CEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECHHCCHHHHHH
VENALNGIPDEFSDIDCLINNAGLALGLDTADKADFEDWETMIQTNVLGLTFLTRKILPQ
HHHHHCCCCCCCCCHHHEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MVERGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLNLRAELADKNIRVTNIEPGLC
HHHCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCC
GNTEFSNVRFKGDDEKAAGVYEGVEFIRPEDIAETALWLYRRPAHMNVNTIEIMPVAQTF
CCCCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHH
AGMKVIKTAVPEVREDFEKQSMSLFSRIRSWFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADELGALFYPLEMDVSRRES
EEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECHHCCHHHHHH
VENALNGIPDEFSDIDCLINNAGLALGLDTADKADFEDWETMIQTNVLGLTFLTRKILPQ
HHHHHCCCCCCCCCHHHEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MVERGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLNLRAELADKNIRVTNIEPGLC
HHHCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCC
GNTEFSNVRFKGDDEKAAGVYEGVEFIRPEDIAETALWLYRRPAHMNVNTIEIMPVAQTF
CCCCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHH
AGMKVIKTAVPEVREDFEKQSMSLFSRIRSWFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]