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The map label for this gene is ycfH [C]

Identifier: 161869715

GI number: 161869715

Start: 740130

End: 740909

Strand: Direct

Name: ycfH [C]

Synonym: NMCC_0735

Alternate gene names: 161869715

Gene position: 740130-740909 (Clockwise)

Preceding gene: 161869714

Following gene: 161869716

Centisome position: 34.37

GC content: 52.44

Gene sequence:

>780_bases
ATGCATATCATCGATTCGCACTGCCACCTCAATTTTGAAGGTTTGAAAGAACGCCTGCCCGAAGTTTTGTCCAACATGGA
AGCAAACGGCGTGGGGCAGGCGCTCGCCATCAGCGTCAGTAGGGAAAGCTTCTCCGAAGTCTTTGCCATCGCCGAAGCGC
ACGAACACATCTATTGCACCATAGGCGTACATCCCGACAGCAAGGAAGCCGAAGAATTTTCTATTGCGGAAATGGTTGCC
GCAGCCGCCTCGCCGAAAGTGGTCGGCATTGGCGAGACGGGTTTGGATTATTACTGGTGCAAAGGCGATTTGTCCTGGCA
ACACAAACGCTTTGCAGACCACATCGAAGCAGCCAATCAAACCGGACTGCCCGTTATCGTCCATACGCGTGATGCGGCGG
CGGACACCTTGTCTATCCTGAAAGAATGCCGGGTTAATTCGGGCGTTATCCACTGTTTTTCCGAAGACATCGGTTTTGCC
CGTGCAGCAATGGATTTGGGGCTTTATATTTCTTTCTCGGGAATCGTTACCTTTAAAAACGCACCCTTGGTTCAGGAGGC
GGCAAAATACGTTCCGGACGACCGCATTTTGGTGGAAACCGATGCGCCGTTCCTCGCCCCCGTTCCCAAACGCGGCAGGC
AGAACGAACCGGCTTTTGTGCGCCATACCGCCGAACATATCGCCAAATTGCGGAACCAAACATTGGAACAGGTTGCGGCA
TATACGACGGAAAACTTTTACCGGCTGTTTAAAAAAGTACCCGATATGCGGACCGTCTGA

Upstream 100 bases:

>100_bases
TTCACAAAACACGAAAACTGCCTGAAAGTCAAAGACCAGATCGAAGTCGAACTGGGCAACACAATCGGCGGCAGCAGATC
TACGTTTACCATGTAACGCC

Downstream 100 bases:

>100_bases
CCCTGTACCGACGATAAGGAAAACCATGAAGGCAATTCATCCGTATGCATGTCCGCGCTGCTGCCGGCTGCCTGCCAACA
CGTTTCGGACAGGCATGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESFSEVFAIAEAHEHIYCTIGVHPDSKEAEEFSIAEMVA
AAASPKVVGIGETGLDYYWCKGDLSWQHKRFADHIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFA
RAAMDLGLYISFSGIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPAFVRHTAEHIAKLRNQTLEQVAA
YTTENFYRLFKKVPDMRTV

Sequences:

>Translated_259_residues
MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESFSEVFAIAEAHEHIYCTIGVHPDSKEAEEFSIAEMVA
AAASPKVVGIGETGLDYYWCKGDLSWQHKRFADHIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFA
RAAMDLGLYISFSGIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPAFVRHTAEHIAKLRNQTLEQVAA
YTTENFYRLFKKVPDMRTV
>Mature_259_residues
MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESFSEVFAIAEAHEHIYCTIGVHPDSKEAEEFSIAEMVA
AAASPKVVGIGETGLDYYWCKGDLSWQHKRFADHIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFA
RAAMDLGLYISFSGIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPAFVRHTAEHIAKLRNQTLEQVAA
YTTENFYRLFKKVPDMRTV

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=265, Percent_Identity=27.9245283018868, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=25.2830188679245, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI14042943, Length=269, Percent_Identity=26.3940520446097, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI110349730, Length=265, Percent_Identity=25.2830188679245, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=25.1851851851852, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903439, Length=235, Percent_Identity=28.5106382978723, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI226061614, Length=254, Percent_Identity=25.9842519685039, Blast_Score=84, Evalue=9e-17,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=44.3137254901961, Blast_Score=221, Evalue=5e-59,
Organism=Escherichia coli, GI87082439, Length=252, Percent_Identity=27.7777777777778, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI48994985, Length=229, Percent_Identity=30.5676855895196, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=28.2442748091603, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17559024, Length=279, Percent_Identity=24.0143369175627, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17543026, Length=293, Percent_Identity=27.3037542662116, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=299, Percent_Identity=27.0903010033445, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI221330018, Length=274, Percent_Identity=27.3722627737226, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24586117, Length=274, Percent_Identity=27.3722627737226, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24648690, Length=282, Percent_Identity=26.9503546099291, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28725; Mature: 28725

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESFSEVFAIAEAHEHIYCT
CCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEE
IGVHPDSKEAEEFSIAEMVAAAASPKVVGIGETGLDYYWCKGDLSWQHKRFADHIEAANQ
EEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
TGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFARAAMDLGLYISFSGIVTFKN
CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCEEEEEEEEEEECC
APLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPAFVRHTAEHIAKLRNQTLEQVAA
CCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YTTENFYRLFKKVPDMRTV
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESFSEVFAIAEAHEHIYCT
CCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEE
IGVHPDSKEAEEFSIAEMVAAAASPKVVGIGETGLDYYWCKGDLSWQHKRFADHIEAANQ
EEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
TGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFARAAMDLGLYISFSGIVTFKN
CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCEEEEEEEEEEECC
APLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPAFVRHTAEHIAKLRNQTLEQVAA
CCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YTTENFYRLFKKVPDMRTV
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]