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The map label for this gene is ihfA [H]

Identifier: 161869670

GI number: 161869670

Start: 701589

End: 701891

Strand: Direct

Name: ihfA [H]

Synonym: NMCC_0688

Alternate gene names: 161869670

Gene position: 701589-701891 (Clockwise)

Preceding gene: 161869669

Following gene: 161869671

Centisome position: 32.58

GC content: 48.18

Gene sequence:

>303_bases
ATGACTCTCACTAAAGCAGAACTGGCCGATATTTTGGTAGACAAAGTCAGCAACGTCACCAAAAACGATGCCAAAGAAAT
CGTCGAACTCTTTTTTGAAGAAATCCGCAGCACTTTGGCAAGCGGCGAAGAAATCAAAATTTCCGGTTTCGGAAATTTCC
AGTTGCGCGACAAGCCGCAACGCCCGGGTCGTAATCCTAAAACCGGCGAGGAAGTGCCGATTACCGCCCGCCGCGTGGTA
ACTTTCCATGCCAGCCAGAAACTCAAAAGCATGGTGGAACACTACTATGACAAACAACGTTGA

Upstream 100 bases:

>100_bases
GCGGCAGGGGCGCGGCTTCGCAGTTAAAAAATAAATATTCGCTTGAATTTTAAATAAAAATTGGTAATAATCCACAACTG
TTACAACAGAAGGTAATCAT

Downstream 100 bases:

>100_bases
TTTGAAGGTTCCCGCAAAACGCTATTTCACGCTGGACGAGTTGTGCGGACTGTTGCAAATCAGCCCCTATGGTTTTGCGC
AATGGCAGCATGATCACGGT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVV
TFHASQKLKSMVEHYYDKQR

Sequences:

>Translated_100_residues
MTLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVV
TFHASQKLKSMVEHYYDKQR
>Mature_99_residues
TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVT
FHASQKLKSMVEHYYDKQR

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=94, Percent_Identity=69.1489361702128, Blast_Score=135, Evalue=5e-34,
Organism=Escherichia coli, GI1787141, Length=93, Percent_Identity=36.5591397849462, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI1786644, Length=84, Percent_Identity=32.1428571428571, Blast_Score=62, Evalue=6e-12,
Organism=Escherichia coli, GI1790433, Length=91, Percent_Identity=32.967032967033, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11422; Mature: 11291

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQ
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
RPGRNPKTGEEVPITARRVVTFHASQKLKSMVEHYYDKQR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQ
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
RPGRNPKTGEEVPITARRVVTFHASQKLKSMVEHYYDKQR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA