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The map label for this gene is nusB [H]

Identifier: 161869623

GI number: 161869623

Start: 651511

End: 651936

Strand: Reverse

Name: nusB [H]

Synonym: NMCC_0640

Alternate gene names: 161869623

Gene position: 651936-651511 (Counterclockwise)

Preceding gene: 161869624

Following gene: 161869619

Centisome position: 30.27

GC content: 57.04

Gene sequence:

>426_bases
ATGAAAACAGCCCGCCGCCGTTCCCGCGAGCTTGCCGTACAAGCCGTTTACCAATCCCTTATCAACCGCACCGCCGCGCC
CGAAATTGCTAAAAACATCCGCGAAATGCCCGACTTTGCCAAAGCGGACGAAGAATTGTTCAACAAACTTTTCTTCGGTA
CGCAAACCAACGCAGCGGACTACATCCAAAAAATCCGCCCCCTGCTCGACCGCGACGAAAAAGACCTCAATCCCATCGAA
CGCGCCGTCCTGCTGACCGCCTGCCACGAGCTGTCCGCCATGCCCGAAACGCCCTACCCCGTCATTATCAACGAAGCCAT
CGAAGTTACCAAAACCTTCGGCGGCACGGACGGGCACAAATTCGTCAACGGCATCCTCGACAAACTCGCTGCCCAAATCC
GCCCCGACGAGCCCAAACGCCGTTGA

Upstream 100 bases:

>100_bases
AACAGTTTGAAGACGAAGAATAACAAACAGGGCGTACACCAATACGCCCTTTCCGTTTCAGACGGCATACCGTGCCGCCC
AACCGTTTCAAGGAAAAATC

Downstream 100 bases:

>100_bases
CACTCCGGAAAATCCGAATTGGAAAATACATAAATGCCGTCTGAAAAACCTTTCAGACGGCATTTTGCTTGACCGTTCAA
TCAATACTGTACCGTCCAGC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADEELFNKLFFGTQTNAADYIQKIRPLLDRDEKDLNPIE
RAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKRR

Sequences:

>Translated_141_residues
MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADEELFNKLFFGTQTNAADYIQKIRPLLDRDEKDLNPIE
RAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKRR
>Mature_141_residues
MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADEELFNKLFFGTQTNAADYIQKIRPLLDRDEKDLNPIE
RAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKRR

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=128, Percent_Identity=40.625, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 16008; Mature: 16008

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADEELFNKLFFGTQTNAAD
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
YIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHH
FVNGILDKLAAQIRPDEPKRR
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADEELFNKLFFGTQTNAAD
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
YIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHH
FVNGILDKLAAQIRPDEPKRR
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA