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The map label for this gene is bkdR [H]

Identifier: 161869506

GI number: 161869506

Start: 539907

End: 540773

Strand: Reverse

Name: bkdR [H]

Synonym: NMCC_0519

Alternate gene names: 161869506

Gene position: 540773-539907 (Counterclockwise)

Preceding gene: 161869513

Following gene: 161869505

Centisome position: 25.11

GC content: 50.17

Gene sequence:

>867_bases
TTGCGCGGTTGTCTGAATGGTGGTTCAGACGGCCTTCTCCCCTTCGGTGGACGTTATTCCAACGCCGCTCTCCAGATTGT
TTGTTTCAATGTGCAGTCCCTGATACCTGAGCGATTTAAGGGTGTCTGCGCCTTCGGTGGTTACATTGTAGTTGGGTGTA
ACACTCTCCTGCACATTTCCCGATTATGTCTTGAATCGGCGGTTTGGGCAAGCCGTCTTAAAAGAGATGCAAACCGACCG
CCTCTGTTTTCACATGATTTTCCGAAAACAAAATTTGTCCCGGATGACGGTATAACTTTTTATATGTTAATATGGTCTCC
ATCTGTGCGGATTGCCGCAAACATACGGACAGACAATCCGAATTCCTTAAAACGGAACGCAAATATGCCCCAACTCACTT
TAGACAAAACCGATATTAAAATCTTACAGGTTCTCCAGGAAAACGGCAGGCTGACCAATGTCGAACTGTCCGAACGTGTC
GCACTTTCGCCTTCTCCGTGCCTGCGCCGTCTGAAGCAGTTGGAAGATGCCGGCATCGTCCGCCAATATGCCGCGCTGCT
GTCTCCGGAATCCGTCAACCTGGGGCTTCAGGCATTTATCCGCGTTTCCATCCGCAAAGCAAAAGACGCGCGGGAAGACT
TTGCCGCATCGGTCCGAAAATGGCCGGAAGTCTTGAGCTGCTTCGCCCTGACAGGGGAAACCGACTACCTGCTTCAGGCG
TTTTTTACCGATATGAACGCGTTTTCCCATTTTGTTTTGGATACGCTCCTGTCCCACCACGGCGTACAAGATGCGCAATC
GAGCTTTGTTTTAAAAGAAATCAAACACACCACCTCCCTGCCGCTCAACCACCTGCTGAAGGAATAG

Upstream 100 bases:

>100_bases
AGATGCCACCCGCGCACCTGTGCGCGGATGACCCTATCTGTCCTTGAACCTGAGATTTTCGGCCGTATCCGCATGATGGC
AAACCAGTCTGCTCACTGCT

Downstream 100 bases:

>100_bases
TGCCCTTCCCGATTTTCCCGCACGTGCAATCTGCAAACACATTTACATGACAATAATGAATATCAATACTTCCGAAAATA
AAGATGCTGTTGCCGAACAC

Product: transcription regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MRGCLNGGSDGLLPFGGRYSNAALQIVCFNVQSLIPERFKGVCAFGGYIVVGCNTLLHISRLCLESAVWASRLKRDANRP
PLFSHDFPKTKFVPDDGITFYMLIWSPSVRIAANIRTDNPNSLKRNANMPQLTLDKTDIKILQVLQENGRLTNVELSERV
ALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQA
FFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE

Sequences:

>Translated_288_residues
MRGCLNGGSDGLLPFGGRYSNAALQIVCFNVQSLIPERFKGVCAFGGYIVVGCNTLLHISRLCLESAVWASRLKRDANRP
PLFSHDFPKTKFVPDDGITFYMLIWSPSVRIAANIRTDNPNSLKRNANMPQLTLDKTDIKILQVLQENGRLTNVELSERV
ALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQA
FFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE
>Mature_288_residues
MRGCLNGGSDGLLPFGGRYSNAALQIVCFNVQSLIPERFKGVCAFGGYIVVGCNTLLHISRLCLESAVWASRLKRDANRP
PLFSHDFPKTKFVPDDGITFYMLIWSPSVRIAANIRTDNPNSLKRNANMPQLTLDKTDIKILQVLQENGRLTNVELSERV
ALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQA
FFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=152, Percent_Identity=40.1315789473684, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=39.7350993377483, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 32147; Mature: 32147

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGCLNGGSDGLLPFGGRYSNAALQIVCFNVQSLIPERFKGVCAFGGYIVVGCNTLLHIS
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHCHHHCCCEEEEHHHHHHHHH
RLCLESAVWASRLKRDANRPPLFSHDFPKTKFVPDDGITFYMLIWSPSVRIAANIRTDNP
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCC
NSLKRNANMPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIV
CHHHHCCCCCEEEECHHHHHHHHHHHHCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHH
RQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MRGCLNGGSDGLLPFGGRYSNAALQIVCFNVQSLIPERFKGVCAFGGYIVVGCNTLLHIS
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHCHHHCCCEEEEHHHHHHHHH
RLCLESAVWASRLKRDANRPPLFSHDFPKTKFVPDDGITFYMLIWSPSVRIAANIRTDNP
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCC
NSLKRNANMPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIV
CHHHHCCCCCEEEECHHHHHHHHHHHHCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHH
RQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]