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The map label for this gene is ycjD [H]

Identifier: 161869364

GI number: 161869364

Start: 372451

End: 372840

Strand: Reverse

Name: ycjD [H]

Synonym: NMCC_0370

Alternate gene names: 161869364

Gene position: 372840-372451 (Counterclockwise)

Preceding gene: 161869365

Following gene: 161869363

Centisome position: 17.31

GC content: 52.56

Gene sequence:

>390_bases
ATGAGCACGCACGAGAAACTTTTAACCGCCGACAACCCCATCTTGCGCCAACGCGCCAAAGCCATGCGCCAAGAAATGAG
CGGGGCGGAAGCAAAATTGTGGCAGCACCTGCGGGCAGGTCGTCTGAACGGCTATAAATTCCGCCGCCAGCAGCCGATGG
GAAACTATATTGTTGATTTTATGTGCGTAACGCCCAAGTTGATTGTCGAAGCAGACGGAGGGCAGCACACAGAACAAGCC
GCATACGACCACGCGCGGACGGCATATCTCAACAGCTTGGGCTTTACCGTACTGCGGTTTTGGAATCACGAGATTTTACA
GCAGACAAACGATGTGCTGACAGAAATCCTGCTCGTGTTGCAAGAATTGGAAAAGCAAGCTGCACGATAG

Upstream 100 bases:

>100_bases
CCTTAATCCCAACCGCCACCACGTCCTCTCTCCCATGGGAGAGAGTCAGAGAGAGGGCAACAAACTGTAAGGCTTACACA
AACAGTAACCCGACAACAGA

Downstream 100 bases:

>100_bases
CAGATGGCTGATTTTGATTGGATTATTGAAAATAATAGGATAAAGCCGACTGAATTGAGCATTTATAAAGGCCGTCTGAA
AAACAAAAAGCAGCCTGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSTHEKLLTADNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQA
AYDHARTAYLNSLGFTVLRFWNHEILQQTNDVLTEILLVLQELEKQAAR

Sequences:

>Translated_129_residues
MSTHEKLLTADNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQA
AYDHARTAYLNSLGFTVLRFWNHEILQQTNDVLTEILLVLQELEKQAAR
>Mature_128_residues
STHEKLLTADNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAA
YDHARTAYLNSLGFTVLRFWNHEILQQTNDVLTEILLVLQELEKQAAR

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=113, Percent_Identity=46.0176991150442, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14895; Mature: 14764

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHEKLLTADNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDF
CCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHH
MCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWNHEILQQTNDVLTEILLVL
HHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QELEKQAAR
HHHHHHHCC
>Mature Secondary Structure 
STHEKLLTADNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDF
CCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHH
MCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWNHEILQQTNDVLTEILLVL
HHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QELEKQAAR
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]