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The map label for this gene is ydeO [C]

Identifier: 161869243

GI number: 161869243

Start: 265034

End: 265882

Strand: Reverse

Name: ydeO [C]

Synonym: NMCC_0248

Alternate gene names: 161869243

Gene position: 265882-265034 (Counterclockwise)

Preceding gene: 161869253

Following gene: 161869242

Centisome position: 12.35

GC content: 57.01

Gene sequence:

>849_bases
GTGGAGGGCAGCTACCGTTTCGATACTTTGTCCAACGGCATTTCCATCCACGGCGGCACGGTAACGGCACGGTGCGATTT
TTGCAGCAGCCGCCTCGCCGAACCTTATGTGTCGTTCGTGCTCTTGCTGGAAGGCAGTTTGGACTTCGGCATCAACCGCC
GCCGCTTCCAAATCGATGCGGATGGCGGCAAGATCGTCCTAATTGCTGTCGGGGAAGAGGTCCTGTTCAGCCGCTATCTT
TACCGAGGCGGCAAAACGGTCAAAATGACCATTAAAGGTATGGAACAATGGCTGCTGCGTCCGGAGTATGCGCGTTTCGC
ACCCCTGCTTTACCGCGAACCGGTCAGAATATGGAATTTGTCCCCAAACCTGCGCGGCTTGGCGGCATCCTGCCTGAAAG
CTGTCCCAAAGGGGCATTTGGGCGAAACATTGCGCCGCGAGGCGGACGTTTTGCGGCTGCTGTCGGACTTGTGGGACACG
GTTTCAGACGGCATCGGGCCGGCGGCGGGGCAAACGGCGGAAGCAGACGCTATGCCGTCTGAAGACTTCAGCCGCATCCT
GAATGCCGCGTTTGCCGGCGGCGCACATCAAGTCAACCGGCTGGCAGACACGCTGAACATCAGCGAAAGGACGCTGCAAC
GCCGTATGCGCGACCATTTCGGCATTACGGCAAGCGAATGGCTGCACCACAAACAAATGCAGCACGCGCTCTATCTGTTG
CAAAACGGGGGAAAAAGCATAGGCGAAACCGCATATTTATGCGGCTACCGCCACGTTTCCAGCTTTACTCAGGCATTCAG
GCAATATTTCGGCAGCACGCCTGCGGAAACCAAAAAAGAAAACCGGTAA

Upstream 100 bases:

>100_bases
TCTTTCAAATGATAACCTTTATCAGAAAACTATGGAAAAAGCAGAACATTTGAACAGCAGCCGGTTCGTCAATCTGGTCA
AAAGCGGCGGCGGCAGCTAT

Downstream 100 bases:

>100_bases
GCCGCATTTGATTTAAAACCCGAAATCCGCATGTCTGGATATGTTCAGTTTTTGGGTACTGATTCCAAAGGTCAATCTAA
ATTTATTTTTGTTGGAACCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC/XylS Family; Transcriptional Regulator AraC Family; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; Transcriptional Regulator Protein

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MEGSYRFDTLSNGISIHGGTVTARCDFCSSRLAEPYVSFVLLLEGSLDFGINRRRFQIDADGGKIVLIAVGEEVLFSRYL
YRGGKTVKMTIKGMEQWLLRPEYARFAPLLYREPVRIWNLSPNLRGLAASCLKAVPKGHLGETLRREADVLRLLSDLWDT
VSDGIGPAAGQTAEADAMPSEDFSRILNAAFAGGAHQVNRLADTLNISERTLQRRMRDHFGITASEWLHHKQMQHALYLL
QNGGKSIGETAYLCGYRHVSSFTQAFRQYFGSTPAETKKENR

Sequences:

>Translated_282_residues
MEGSYRFDTLSNGISIHGGTVTARCDFCSSRLAEPYVSFVLLLEGSLDFGINRRRFQIDADGGKIVLIAVGEEVLFSRYL
YRGGKTVKMTIKGMEQWLLRPEYARFAPLLYREPVRIWNLSPNLRGLAASCLKAVPKGHLGETLRREADVLRLLSDLWDT
VSDGIGPAAGQTAEADAMPSEDFSRILNAAFAGGAHQVNRLADTLNISERTLQRRMRDHFGITASEWLHHKQMQHALYLL
QNGGKSIGETAYLCGYRHVSSFTQAFRQYFGSTPAETKKENR
>Mature_282_residues
MEGSYRFDTLSNGISIHGGTVTARCDFCSSRLAEPYVSFVLLLEGSLDFGINRRRFQIDADGGKIVLIAVGEEVLFSRYL
YRGGKTVKMTIKGMEQWLLRPEYARFAPLLYREPVRIWNLSPNLRGLAASCLKAVPKGHLGETLRREADVLRLLSDLWDT
VSDGIGPAAGQTAEADAMPSEDFSRILNAAFAGGAHQVNRLADTLNISERTLQRRMRDHFGITASEWLHHKQMQHALYLL
QNGGKSIGETAYLCGYRHVSSFTQAFRQYFGSTPAETKKENR

Specific function: Induces The Expression Of Gade And Yhiuv. Could Also Regulate The Expression Of Other Genes Involved In Acid Resistance. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31564; Mature: 31564

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGSYRFDTLSNGISIHGGTVTARCDFCSSRLAEPYVSFVLLLEGSLDFGINRRRFQIDA
CCCCCCCHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
DGGKIVLIAVGEEVLFSRYLYRGGKTVKMTIKGMEQWLLRPEYARFAPLLYREPVRIWNL
CCCEEEEEECCHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHCCCEEEEC
SPNLRGLAASCLKAVPKGHLGETLRREADVLRLLSDLWDTVSDGIGPAAGQTAEADAMPS
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
EDFSRILNAAFAGGAHQVNRLADTLNISERTLQRRMRDHFGITASEWLHHKQMQHALYLL
HHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QNGGKSIGETAYLCGYRHVSSFTQAFRQYFGSTPAETKKENR
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MEGSYRFDTLSNGISIHGGTVTARCDFCSSRLAEPYVSFVLLLEGSLDFGINRRRFQIDA
CCCCCCCHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
DGGKIVLIAVGEEVLFSRYLYRGGKTVKMTIKGMEQWLLRPEYARFAPLLYREPVRIWNL
CCCEEEEEECCHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHCCCEEEEC
SPNLRGLAASCLKAVPKGHLGETLRREADVLRLLSDLWDTVSDGIGPAAGQTAEADAMPS
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
EDFSRILNAAFAGGAHQVNRLADTLNISERTLQRRMRDHFGITASEWLHHKQMQHALYLL
HHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QNGGKSIGETAYLCGYRHVSSFTQAFRQYFGSTPAETKKENR
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA