Click here to switch to the map view.

The map label for this gene is cyaY

Identifier: 161869231

GI number: 161869231

Start: 246197

End: 246520

Strand: Reverse

Name: cyaY

Synonym: NMCC_0235

Alternate gene names: 161869231

Gene position: 246520-246197 (Counterclockwise)

Preceding gene: 161871031

Following gene: 161869230

Centisome position: 11.45

GC content: 53.4

Gene sequence:

>324_bases
ATGATGACCGAAAGCGAGTTTATCCGCGCGAGCGAAGCATTATTTGAACACATCGAAGACCAAATCGACGAAAACGGCTG
GGATTTCGACTGCCGGTTTGCCGGAAACGTCCTGACCATCGAAGCCGGAGACGGCACGCAAATCATCGTCAACCGCCACA
CGCCCAATCAGGAATTGTGGATTGCCGCAAAAAGCGGCGGCTACCATTTCGCCGAACAAAACGGCAAATGGCTGGCAACG
CGCGACAGCCGCGATTTTTATGATGTTTTGAACGAAGCACTGAGCGCGGCTTCGGGCGAAGCGGTTGAGATTGCCGAATT
GTAA

Upstream 100 bases:

>100_bases
TGCCGCCGCAAAAAATACGCCGTATTTCATCGGTAAACTTCCTTCATAAGCGCGAATGTGGCAAGATTCGGCATCTTAAA
CAAAAAACACGCAAAAAGCT

Downstream 100 bases:

>100_bases
TTTGAGTGTTATCACGGAGAGAAAAAATGAACACACGTCCCTTTTATTTCGGACTTATATTTATCGCGATTATCGCTATA
TTTGCTAACTATTTAGGAAA

Product: frataxin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAGDGTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLAT
RDSRDFYDVLNEALSAASGEAVEIAEL

Sequences:

>Translated_107_residues
MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAGDGTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLAT
RDSRDFYDVLNEALSAASGEAVEIAEL
>Mature_107_residues
MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAGDGTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLAT
RDSRDFYDVLNEALSAASGEAVEIAEL

Specific function: Not Known; Its Knock Out Does Not Affect Cellular Iron Content. [C]

COG id: COG1965

COG function: function code P; Protein implicated in iron transport, frataxin homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the frataxin family

Homologues:

Organism=Escherichia coli, GI1790239, Length=103, Percent_Identity=38.8349514563107, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYAY_NEIG1 (Q5F536)

Other databases:

- EMBL:   AE004969
- RefSeq:   YP_209113.1
- ProteinModelPortal:   Q5F536
- SMR:   Q5F536
- STRING:   Q5F536
- EnsemblBacteria:   EBNEIT00000003353
- GeneID:   3282817
- GenomeReviews:   AE004969_GR
- KEGG:   ngo:NGO2100
- NMPDR:   fig|242231.4.peg.1363
- eggNOG:   COG1965
- GeneTree:   EBGT00050000021666
- HOGENOM:   HBG687517
- OMA:   EPLHQIW
- PhylomeDB:   Q5F536
- ProtClustDB:   PRK00446
- BioCyc:   NGON242231:NGO2100-MONOMER
- HAMAP:   MF_00142
- InterPro:   IPR002908
- InterPro:   IPR020895
- Gene3D:   G3DSA:3.30.920.10
- TIGRFAMs:   TIGR03421

Pfam domain/function: PF01491 Frataxin_Cyay; SSF55387 Frataxin_like

EC number: NA

Molecular weight: Translated: 11996; Mature: 11996

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: PS01344 FRATAXIN_1; PS50810 FRATAXIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAGDGTQIIVNRHTPNQELW
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCCCEEE
IAAKSGGYHFAEQNGKWLATRDSRDFYDVLNEALSAASGEAVEIAEL
EEECCCCEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECC
>Mature Secondary Structure
MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAGDGTQIIVNRHTPNQELW
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCCCEEE
IAAKSGGYHFAEQNGKWLATRDSRDFYDVLNEALSAASGEAVEIAEL
EEECCCCEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA