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The map label for this gene is ygaD [H]

Identifier: 161869061

GI number: 161869061

Start: 38435

End: 38920

Strand: Direct

Name: ygaD [H]

Synonym: NMCC_0044

Alternate gene names: 161869061

Gene position: 38435-38920 (Clockwise)

Preceding gene: 161869060

Following gene: 161869063

Centisome position: 1.78

GC content: 61.11

Gene sequence:

>486_bases
ATGGACGCGCTGCACACCATCGCCCGAAACCTGACGAAAAAACGTCAAACCGTAAGCTGTGCCGAATCCTGCACGGGTGG
GCTGCTTGCCGCCGTATTCACAAGCGTTGCAGGCAGTTCGCAATGGTTCGATCAAAGTTTTGTAACATACAGCAACAAAG
CCAAAGAAGACCGCTTGGGCGTGTTGCCCGAAACCCTGCTCGAACACGGCGCGGTCAGCCGCCAAACCGTCTATGAGATG
GCGCGCGGCGCGAAAGCCGTGGCGCAGGCGGATTACGCCGTCGGTATTTCCGGCATCGCCGGTCCGGGCGGCGGCAGCGA
AAGCAAACCCGTCGGCACGGTTTGGTTCGGGTTTGCCTTTCCGGGCGGAAGTTGCGAAGCAATGCGCCGTTTTGACGGCA
ACCGCGAATCCGTCCGCGCGCAGGCGGTCGCCTTCGCGTTGGAACGGTTGGCGGGGCTGATTGAAAACGGCGGCGATGCC
GTCTAA

Upstream 100 bases:

>100_bases
GTGGTCGAAAACCTCCGCAAAGTCAATATCAACATCCCGTTCCCGCAACGCGACATACACATCATCAATTCTTAAACGCC
GTCTGAAAGAGGAGTGGGAA

Downstream 100 bases:

>100_bases
ACAAAATCTCCGTCTGGACAAAATCCCCGCCGGATAAAAAATACCGTCTGAAACGTTGCAGGTTTCAGACGGTATTTTGT
CGGGTTAGGCGGCGGTGCGG

Product: competence/damage inducible protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MDALHTIARNLTKKRQTVSCAESCTGGLLAAVFTSVAGSSQWFDQSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEM
ARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
V

Sequences:

>Translated_161_residues
MDALHTIARNLTKKRQTVSCAESCTGGLLAAVFTSVAGSSQWFDQSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEM
ARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
V
>Mature_161_residues
MDALHTIARNLTKKRQTVSCAESCTGGLLAAVFTSVAGSSQWFDQSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEM
ARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
V

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=151, Percent_Identity=55.6291390728477, Blast_Score=156, Evalue=7e-40,
Organism=Escherichia coli, GI1787818, Length=139, Percent_Identity=36.6906474820144, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 16864; Mature: 16864

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALHTIARNLTKKRQTVSCAESCTGGLLAAVFTSVAGSSQWFDQSFVTYSNKAKEDRLG
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCC
VLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAF
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC
PGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDAV
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDALHTIARNLTKKRQTVSCAESCTGGLLAAVFTSVAGSSQWFDQSFVTYSNKAKEDRLG
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCC
VLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGPGGGSESKPVGTVWFGFAF
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC
PGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDAV
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]