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The map label for this gene is ycdB [H]

Identifier: 161869054

GI number: 161869054

Start: 32260

End: 33627

Strand: Direct

Name: ycdB [H]

Synonym: NMCC_0037

Alternate gene names: 161869054

Gene position: 32260-33627 (Clockwise)

Preceding gene: 161869053

Following gene: 161869059

Centisome position: 1.5

GC content: 58.11

Gene sequence:

>1368_bases
ATGAGCAAAAACCAACCCGCACAACCGACCAGGCGCACTCTTTTTAAAACCGCGATCGCAGCCGGAGCAGTCGGCGCAAT
CGGAGGTTATCTCGGCGGCAAAAAACAGGGCGAAACCGCCGAACGCACCGCCGAAAGCCAACACTCGCCCCAAGCCTATC
CCTGCTACGGCGAACATCAGGCAGGCATCGTTACGCCGCAGCAGGCGTTTTCGATTATGTGCGCCTTCGACGTAACCGCG
CAAAGTGCCAAGCAGCTGGAAAACCTGTTCCGCACGCTGACCGCCCGCATCGAGTTTCTCACCCAAGGCGGCGAATACCA
AGACGGCGACGACAAACTTCCGCCAGCCGGCAGCGGCATTTTGGGCAAAGCCTTCAACCCCGACGGGTTGACCGTTACCG
TGGGGGTGGGCAGCAGCCTGTTTGACGGCCGGTTCGGACTCAAAGACAAAAAACCGATTCATTTGCAGGAAATGCGCGAC
TTCTCCAACGATAAGCTGCAAAAAAGCTGGTGCGACGGCGATTTGAGCCTGCAAATCTGTGCCTTCACCCCCGAAACCTG
CCAAGCCGCCCTGCGCGACATCATCAAACACACCGTCCAAACCGCCGTTATCCGCTGGAGTATCGACGGGTGGCAGCCTA
AATCCGAACCCGGCGCGATGGCGGCGCGCAACCTGTTGGGCTTCAGGGACGGCACGGGCAACCCCAAAGTTTCCGACCCC
AAAACCGCCGACGAGGTTTTGTGGACGGGTGTGGCCGCCAACAGCCTCGACGAACCGGAGTGGGCGAAAAACGGCAGCTA
TCAGGCAGTCCGCCTTATCCGCCACTTTGTCGAGTTTTGGGACAGGACGCCGCTTCAAGAGCAAACCGACATTTTCGGGC
GGCGCAAATACAACGGCGCGCCGATGGACGGCAAAAAAGAAGCCGACCAGCCGGATTTTGCCAAAGACCCCGAGGGCAAT
ATCACGCCCAAAGACAGCCATATACGCCTGGCAAACCCGCGCGATCCCGAATTCCTCAAAAAACACCGCCTCTTCCGCCG
CGCCTACAGCTATTCGCGCGGACTCGCCTCAAGCGGACAGCTTGATGTCGGGCTGGTGTTCGTCTGCTATCAGGCAAACC
TTGCCGACGGATTCATCTTCGTGCAAAACCTCCTCAACGGCGAACCGCTGGAAGAATACATCAGCCCCCTTCGGCGGCGG
CTATTTCTTCGTCTTGCCCGGCGTGGAAAAAGGCGGCTTCTTGGGACAAGGGCTGCTGGGCGTATAAATCCGCCATATAA
AAAACGCCGTCCGAACCTTGCCAAACGGGTTCGGACGGCGTTTCTTGTTTTTGGGCGGTCAGGCTTTTTTGACGAATTCG
GATTTTAA

Upstream 100 bases:

>100_bases
CATATATTGCAGGGCGGGATTTCAACCTGCCGCTATCGGTTAATGGAAAAACGGCGTGCAGGGATACCCATCCTGCTGCA
CGGATATTGAAGGAAACACC

Downstream 100 bases:

>100_bases
ATTCATCGCGCTGCCGTCGATTTTGCAGCCGATGTTGTGATCGCCTTCCTGCAGGCGTATGCCTTTGACTTTTGTACCTT
GTTTGATCACCATCGAGCTG

Product: periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTAESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTA
QSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRD
FSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDP
KTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYNGAPMDGKKEADQPDFAKDPEGN
ITPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPLRRR
LFLRLARRGKRRLLGTRAAGRINPPYKKRRPNLAKRVRTAFLVFGRSGFFDEFGF

Sequences:

>Translated_455_residues
MSKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTAESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTA
QSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRD
FSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDP
KTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYNGAPMDGKKEADQPDFAKDPEGN
ITPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPLRRR
LFLRLARRGKRRLLGTRAAGRINPPYKKRRPNLAKRVRTAFLVFGRSGFFDEFGF
>Mature_454_residues
SKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTAESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQ
SAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRDF
SNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDPK
TADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYNGAPMDGKKEADQPDFAKDPEGNI
TPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPLRRRL
FLRLARRGKRRLLGTRAAGRINPPYKKRRPNLAKRVRTAFLVFGRSGFFDEFGF

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=407, Percent_Identity=48.8943488943489, Blast_Score=358, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 50649; Mature: 50518

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00732 RIBOSOMAL_S16

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTAESQHSPQAYPCYGEHQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
AGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGI
CCCCCHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
LGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRDFSNDKLQKSWCDGDLSLQIC
CCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCEEEEE
AFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDP
ECCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
KTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYNGA
CCHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
PMDGKKEADQPDFAKDPEGNITPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQ
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
LDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPLRRRLFLRLARRGKRRLLGTRAAG
CCEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RINPPYKKRRPNLAKRVRTAFLVFGRSGFFDEFGF
CCCCCHHHCCCCHHHHHHHHHHHCCCCCCCHHCCC
>Mature Secondary Structure 
SKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTAESQHSPQAYPCYGEHQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
AGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGI
CCCCCHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
LGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRDFSNDKLQKSWCDGDLSLQIC
CCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCEEEEE
AFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDP
ECCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
KTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYNGA
CCHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
PMDGKKEADQPDFAKDPEGNITPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQ
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
LDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPLRRRLFLRLARRGKRRLLGTRAAG
CCEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RINPPYKKRRPNLAKRVRTAFLVFGRSGFFDEFGF
CCCCCHHHCCCCHHHHHHHHHHHCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]