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The map label for this gene is ycdO [C]

Identifier: 161869053

GI number: 161869053

Start: 30830

End: 31996

Strand: Direct

Name: ycdO [C]

Synonym: NMCC_0036

Alternate gene names: 161869053

Gene position: 30830-31996 (Clockwise)

Preceding gene: 161869052

Following gene: 161869054

Centisome position: 1.43

GC content: 53.64

Gene sequence:

>1167_bases
ATGAGAAAATTCAATTTGACCGCATTGTCCGTGATGCTTGCCTTAGGCTTGACCGCGTGCCAGCCGCCGGAGGCGGAGAA
AGCTGCGCCGGCCGCGTCCGGTGAGGCGCAAACCGCCAACGAGGGCGGTTCGGTCAGTATCGCCGTCAACGACAATGCCT
GCGAACCGATGGAACTGACCGTGCCGAGCGGACAGGTTGTGTTCAATATTAAAAACAACAGCGGCCGCAAGCTCGAATGG
GAAATCCTGAAAGGCGTGATGGTGGTGGACGAGCGCGAAAACATCGCCCCCGGACTTTCCGATAAAATGACCGTCACCCT
GTTGCCGGGCGAATACGAAATGACTTGCGGTCTTTTGACCAATCCGCGCGGCAAGCTGGTGGTAACCGACAGCGGCTTTA
AAGACACCGCCAACGAAGCGGATTTGGAAAAACTGTCCCAACCGCTCGCCGATTATAAAGCCTACGTTCAAGGCGAGGTT
AAAGAGCTGGTGGCGAAAACCAAAACCTTTACCGAAGCCGTCAAAGCAGGCGACATTGAAAAGGCGAAATCCCTGTTTGC
CGACACCCGCGTCCATTACGAACGCATCGAACCGATTGCCGAGCTTTTCAGCGAACTCGACCCCGTCATCGATGCGCGTG
AAGACGACTTCAAAGACGGCGCGAAAGATGCCGGATTTACCGGCTTTCACCGTATCGAATACGCCCTTTGGGTGGAAAAA
GACGTGTCCGGCGTGAAGGAAATTGCAGCGAAACTGATGACCGATGTCGAAGCCCTGCAAAAAGAAATCGACGCATTGGC
GTTTCCTCCGGGCAAGGTGGTCGGCGGCGCATCCGAACTGATTGAAGAAGTGGCGGGCAGTAAAATCAGCGGCGAAGAAG
ACCGGTACAGCCACACCGATTTGAGCGATTTCCAAGCCAATGTGGACGGTTCGAAAAAAATCGTCGATTTGTTCCGTCCG
CTGATCGAGGCTAAAAACAAAGCCTTGTTGGAAAAAACCGATACCAACTTCAAACAGGTCAACGAAATTCTGGCGAAATA
CCGGACTAAAGACGGTTTTGAAACCTACGACAAGCTGGGCGAAGCCGACCGCAAAGCGTTACAGGCTTCTATTAACGCGC
TTGCCGAAGACCTTGCCCAACTTCGCGGCATACTCGGCTTGAAATAA

Upstream 100 bases:

>100_bases
GCGAGGCCTTGGTTTGGCTGCTGTACCTTATTCCCGTCATGACTTGGTTTTTGTGCGGCAGCAGGCCGTCTGAAACTTTA
ACCCGTAAAGAGGAGCTGAA

Downstream 100 bases:

>100_bases
GCCGCAAGCGTTCAGACGGTATTTGGCGGCAGATACCGTCTGAAGTTTTATAGTGGATTAACAAAAACCAGTACGGCATT
GCCTCGCCTTGCCTTGCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGEAQTANEGGSVSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEW
EILKGVMVVDERENIAPGLSDKMTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
KELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFKDGAKDAGFTGFHRIEYALWVEK
DVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGGASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRP
LIEAKNKALLEKTDTNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK

Sequences:

>Translated_388_residues
MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGEAQTANEGGSVSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEW
EILKGVMVVDERENIAPGLSDKMTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
KELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFKDGAKDAGFTGFHRIEYALWVEK
DVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGGASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRP
LIEAKNKALLEKTDTNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK
>Mature_388_residues
MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGEAQTANEGGSVSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEW
EILKGVMVVDERENIAPGLSDKMTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
KELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFKDGAKDAGFTGFHRIEYALWVEK
DVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGGASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRP
LIEAKNKALLEKTDTNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family

Homologues:

Organism=Escherichia coli, GI1787254, Length=343, Percent_Identity=64.7230320699708, Blast_Score=447, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): U409_NEIMB (Q9K1P6)

Other databases:

- EMBL:   AE002098
- PIR:   E81244
- RefSeq:   NP_273101.1
- EnsemblBacteria:   EBNEIT00000010518
- GeneID:   902138
- GenomeReviews:   AE002098_GR
- KEGG:   nme:NMB0035
- NMPDR:   fig|122586.1.peg.35
- TIGR:   NMB0035
- GeneTree:   EBGT00050000021200
- HOGENOM:   HBG570979
- OMA:   TFPPEKV
- ProtClustDB:   PRK10378
- BioCyc:   NMEN122586:NMB_0035-MONOMER
- InterPro:   IPR008972
- InterPro:   IPR018976

Pfam domain/function: PF09375 Peptidase_M75; SSF49503 Cupredoxin

EC number: NA

Molecular weight: Translated: 42251; Mature: 42251

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGEAQTANEGGSVSIAVNDNACEPMELT
CCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEE
VPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDKMTVTLLPGEYEMTCGLLT
CCCCEEEEEEECCCCCEEEHHHHCCCCEEECCCCCCCCCCCCEEEEEECCCCEEEEEEEE
NPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEVKELVAKTKTFTEAVKAGDIE
CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFKDGAKDAGFTGFHRIEYALWVEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHEEEEEEHH
DVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGGASELIEEVAGSKISGEEDRYSHTD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
LSDFQANVDGSKKIVDLFRPLIEAKNKALLEKTDTNFKQVNEILAKYRTKDGFETYDKLG
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
EADRKALQASINALAEDLAQLRGILGLK
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGEAQTANEGGSVSIAVNDNACEPMELT
CCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEE
VPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDKMTVTLLPGEYEMTCGLLT
CCCCEEEEEEECCCCCEEEHHHHCCCCEEECCCCCCCCCCCCEEEEEECCCCEEEEEEEE
NPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEVKELVAKTKTFTEAVKAGDIE
CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFKDGAKDAGFTGFHRIEYALWVEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHEEEEEEHH
DVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGGASELIEEVAGSKISGEEDRYSHTD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
LSDFQANVDGSKKIVDLFRPLIEAKNKALLEKTDTNFKQVNEILAKYRTKDGFETYDKLG
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
EADRKALQASINALAEDLAQLRGILGLK
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307