Click here to switch to the map view.

The map label for this gene is ydhM [C]

Identifier: 161526067

GI number: 161526067

Start: 3163314

End: 3163934

Strand: Direct

Name: ydhM [C]

Synonym: Bmul_2898

Alternate gene names: 161526067

Gene position: 3163314-3163934 (Clockwise)

Preceding gene: 161526063

Following gene: 161526068

Centisome position: 91.73

GC content: 67.63

Gene sequence:

>621_bases
ATGTCGGGCATCGAGGCCGTCAAGCCGCCAGCTCGCCGCACGCGCCGCGCGATCGCCGGCGCCACCGCACAGGAGCATCT
GCTGCGCGCCGCGCAGGAACTGTTTTACCGGGAAGGTGTGCGCAGCGTCGGCGTCGAAGCGGTCGTCGAGCTCGCCGGCG
TCAACAAGATGAGCCTGTATCGTCAGTTCTCGTCGAAGGACGACCTGATCCTCGCGTATCTCGCGCGCATGGATGCGTGC
TTCTTCGAGCGCGTCGACGCGAGCCTCGCGAAGCATCCGGGCGAGCCGAAGGCGCAGCTGATCCAGTATTTCGTCGATCT
CGCCGAGCGCGCGACGCAGAAAGACTACCGCGGCTGCCCGTTCGTCAACGTCGCCGCCGAATTTCCGGACGCGTCGCATC
CGGCGCGCGAGCGCGTCGCGCAGAACAAGGAACAGCTGATGAAGCGGCTCGTCGCGCTCTGCGAAGCGGCCGGCGCGCGC
GATCCGAAGGCGCTCGCCGATTCGCTCGCGCTCGTGATCGAAGGGATCTATGCGGCAAGCCAGACGTACCGGCACGGCGA
AACGCCGATCGGCATCGCACCGGCGCTCGTCACGCAGCTGATCGAGGCCGCCTGCGCGTAG

Upstream 100 bases:

>100_bases
GTCCGGACCGGCATTGTTACTGACCGGTCACAAGTGTGTTGCGATCGTAGTGACCAGTCGGTAACATGTCAAGCAATTCA
CCACGCAGTCGAGGGTCATC

Downstream 100 bases:

>100_bases
CGGCCGCGCGCGCCCGCTACAATGCGGCCGTTGCCGCCCTTCCCGTCCGTTTCCGATGATCGACACCCGCCCCGAATCCA
CCGATGAAATCGTCGCCGCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; TetR Family Regulatory Protein; Tetr Family Transcriptional Regulator; TetR-Type Transcriptional Regulator Of Sulfur Metabolism; Transcriptional Regulator Tetr Family; Transcription Regulator Protein; TetR-Family Protein Transcriptional Regulator; Methionine And Cysteine Biosynthesis Regulator; Transcriptional Regulator Tetr-Like Protein

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSGIEAVKPPARRTRRAIAGATAQEHLLRAAQELFYREGVRSVGVEAVVELAGVNKMSLYRQFSSKDDLILAYLARMDAC
FFERVDASLAKHPGEPKAQLIQYFVDLAERATQKDYRGCPFVNVAAEFPDASHPARERVAQNKEQLMKRLVALCEAAGAR
DPKALADSLALVIEGIYAASQTYRHGETPIGIAPALVTQLIEAACA

Sequences:

>Translated_206_residues
MSGIEAVKPPARRTRRAIAGATAQEHLLRAAQELFYREGVRSVGVEAVVELAGVNKMSLYRQFSSKDDLILAYLARMDAC
FFERVDASLAKHPGEPKAQLIQYFVDLAERATQKDYRGCPFVNVAAEFPDASHPARERVAQNKEQLMKRLVALCEAAGAR
DPKALADSLALVIEGIYAASQTYRHGETPIGIAPALVTQLIEAACA
>Mature_205_residues
SGIEAVKPPARRTRRAIAGATAQEHLLRAAQELFYREGVRSVGVEAVVELAGVNKMSLYRQFSSKDDLILAYLARMDACF
FERVDASLAKHPGEPKAQLIQYFVDLAERATQKDYRGCPFVNVAAEFPDASHPARERVAQNKEQLMKRLVALCEAAGARD
PKALADSLALVIEGIYAASQTYRHGETPIGIAPALVTQLIEAACA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22485; Mature: 22354

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIEAVKPPARRTRRAIAGATAQEHLLRAAQELFYREGVRSVGVEAVVELAGVNKMSLY
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RQFSSKDDLILAYLARMDACFFERVDASLAKHPGEPKAQLIQYFVDLAERATQKDYRGCP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
FVNVAAEFPDASHPARERVAQNKEQLMKRLVALCEAAGARDPKALADSLALVIEGIYAAS
CEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
QTYRHGETPIGIAPALVTQLIEAACA
HHHHCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGIEAVKPPARRTRRAIAGATAQEHLLRAAQELFYREGVRSVGVEAVVELAGVNKMSLY
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RQFSSKDDLILAYLARMDACFFERVDASLAKHPGEPKAQLIQYFVDLAERATQKDYRGCP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
FVNVAAEFPDASHPARERVAQNKEQLMKRLVALCEAAGARDPKALADSLALVIEGIYAAS
CEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
QTYRHGETPIGIAPALVTQLIEAACA
HHHHCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA