| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is rnb [H]
Identifier: 161525942
GI number: 161525942
Start: 3025855
End: 3027927
Strand: Reverse
Name: rnb [H]
Synonym: Bmul_2773
Alternate gene names: 161525942
Gene position: 3027927-3025855 (Counterclockwise)
Preceding gene: 161525943
Following gene: 161525941
Centisome position: 87.81
GC content: 68.93
Gene sequence:
>2073_bases GTGAACGTTTTCTTCGAGGAATCGGGCAGTTTCAAGGCGGGCAGCGTGCTGTCGCGCCAGGGCGACGCGTTTCAGGTCGA GTTGCCCGGCGGGCGGCGCGCGAAGGTGCGCGCGAAGGACGTGCTGATCGAATTCGAGAAGCCGGCCGCGAGCGAGCTGA TGCAGGAAGCCGATGCGGCCGCGCAGCAGATCGACCTGGATTTCCTGTGGGAATGCGCGCCGGCCGAGGAATTCGCGTAT ACGGCGCTCGCCGAAGAGTACTTCGGTGCGACGTACGGCCCGGTCGAACGCGCGGCGCTGGTGCTGCGGCTGCACGGCGC GCCCGTCTACTTCCGCCGCAAGGGGCGCGGCCAGTATCAACGCGCGCCCGAAGAGCAGCTGAAGATGGCGCTCGCGTCGC TCGAGCGCAAGCGCCAGCAGGCGCTCGTTCAGGCCCAGTACGAAGAGGAGCTGAAGGCCGGCAAGCTGCCGGACGCATTC GCCGGCAAGGTGCTCGGCCTGCTGACGCGCCCCGACAAGAACTCGATCGAATACAAGGCGCTCGAGGCGGCGGCCGGCGC GCGCGGCGTGTCGCCCGCGCGGCTCATGCTCGATTGCGGCGGGATCGCGTCGGCGCGCGCGCTGCACGAAGCGCGCTTTC TCGCGGAATTCTTCCCGCACGGCACCGGCTTTCCGCCCGTCACCGTCGGCAGCCTGCCCGACGACCTGCCGCGTGCGGAC GTGCAGGCGTTTTCGATCGACGACATCACGACGACCGAAATCGACGACGCGTTCTCGGTCGAGCATCTGTCCGACGGCCG CGTGCGCGTCGGTGTGCACATCGCGGCGCCGGCGCTCGGCATCGTGCGCGGCGACGCGGTCGACGCGATCGCGCGGGCGC GCCTGTCGACCGTCTATATGCCGGGCGACAAGATCACGATGCTGCCGGACGACGTCGTCGACGTCTTCACGCTGAAGGAG GGCGACTATCGCCCGGCGCTGTCGCTCTACATCATCGTCAATCGCGAGACGCAGGACATCGTCGCGAGCGAGACGCGCGC CGAGCTCGTGTTCGTGAAGAGCAACCTGCGCCACAACACGCTCGACGAACTCGTGACCGAAGAGTCGCTCGCGGCCGGCA CCGGCGACTATCCGCACAAGGACGACATCGCGGTGCTGTGGCCGCTCGCGCAGGCGCTGTTCGAGAAGCGTCAGGTCGCG CGCGCCGGTTACGGGCTGAAGCGCGAAGTACAGCGCAATACCGACTACAACTTCTACGTCGAAGGCGAGCACGTGACGAT CACGCCGCGCCGCCGCGGCTCGCCGCTCGACCTGATCGTGTCGGAGCTCGCGATCCTCGCGAATTCGACCTGGGGTGCGT TCCTGCACGACCACACGGTGCCGGGCATCTACCGGACGCAGCGCGGCTTCGGCGCGCCGGGCCCGAAGCGCACGCGGATG CAGACGACGGCCGCGCCGCACGAAGGGCTCGGCGTCGCGCAGTATGCGTGGAGCACGTCGCCGCTGCGCCGCTACGTCGA CCTCGTCAACCAGTGGCAGCTGCTCGCCTGCGTGCAGCACGGCGTGACCGCGAAGCTCGCCGCGCCGTTCAAGCCGAAGG ACGCCGATCTGTACGCGGTCGTGCAGGGATTCGACGATACCTACACGGCCTACGCCGACCATCAACGCCGGATGGAGTAT TTCTGGTGCCTGCGCTGGCTCGCGCAGGAGCAGAAGAAGCAGGTCGTCGCGACCGTCGTGAAGGGCGATCTCGTGCGTCT CGAGGAAATCCCGCTGTTGCTGCACGTGCCGGCGCTCGGCGTCCATGCGCGCGGCACGCGCGTGCTGCTCGAGGTGATGG CGCTCGACGAGCTGACGATCGAGGCATCGGTGCGGCTGTTGCACGTGCTCGACGCGCCGGTCGTCACGAGCGGCGACGCG GCCGACGAGGACGACGAAGCCGGCGACGACACGCTGCTCGACGCGCAGGAAGCCTCCGCGCAGACCGAGGCCGAAGCGCT GGCCGAATCGGACGACGGTGCGCCGGGCGCCGATGCCGACGCAGGCGCGTCGCAGCAGGAGCGCGCATCGTGA
Upstream 100 bases:
>100_bases CGACGAAAAGGCGACATGAACCGGCCGTGAGCCGGTCGAATTCCCCAACATCATGCGGCGCCGTCTGCGCGGCGTCCGGC AGTCTGAACGAGAGTACTGA
Downstream 100 bases:
>100_bases GCGCGACCGCCCCGACGCGCGGTGCCGACCGCTACGTGGTATTCGGCAATCCGGTGGCGCACAGCAAGTCGCCGTTCATC CACGCGCAGTTCGCCGCGCA
Product: ribonuclease II
Products: NA
Alternate protein names: Exoribonuclease II; RNase II; Ribonuclease II [H]
Number of amino acids: Translated: 690; Mature: 690
Protein sequence:
>690_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADAAAQQIDLDFLWECAPAEEFAY TALAEEYFGATYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALASLERKRQQALVQAQYEEELKAGKLPDAF AGKVLGLLTRPDKNSIEYKALEAAAGARGVSPARLMLDCGGIASARALHEARFLAEFFPHGTGFPPVTVGSLPDDLPRAD VQAFSIDDITTTEIDDAFSVEHLSDGRVRVGVHIAAPALGIVRGDAVDAIARARLSTVYMPGDKITMLPDDVVDVFTLKE GDYRPALSLYIIVNRETQDIVASETRAELVFVKSNLRHNTLDELVTEESLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRTQRGFGAPGPKRTRM QTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADHQRRMEY FWCLRWLAQEQKKQVVATVVKGDLVRLEEIPLLLHVPALGVHARGTRVLLEVMALDELTIEASVRLLHVLDAPVVTSGDA ADEDDEAGDDTLLDAQEASAQTEAEALAESDDGAPGADADAGASQQERAS
Sequences:
>Translated_690_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADAAAQQIDLDFLWECAPAEEFAY TALAEEYFGATYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALASLERKRQQALVQAQYEEELKAGKLPDAF AGKVLGLLTRPDKNSIEYKALEAAAGARGVSPARLMLDCGGIASARALHEARFLAEFFPHGTGFPPVTVGSLPDDLPRAD VQAFSIDDITTTEIDDAFSVEHLSDGRVRVGVHIAAPALGIVRGDAVDAIARARLSTVYMPGDKITMLPDDVVDVFTLKE GDYRPALSLYIIVNRETQDIVASETRAELVFVKSNLRHNTLDELVTEESLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRTQRGFGAPGPKRTRM QTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADHQRRMEY FWCLRWLAQEQKKQVVATVVKGDLVRLEEIPLLLHVPALGVHARGTRVLLEVMALDELTIEASVRLLHVLDAPVVTSGDA ADEDDEAGDDTLLDAQEASAQTEAEALAESDDGAPGADADAGASQQERAS >Mature_690_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADAAAQQIDLDFLWECAPAEEFAY TALAEEYFGATYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALASLERKRQQALVQAQYEEELKAGKLPDAF AGKVLGLLTRPDKNSIEYKALEAAAGARGVSPARLMLDCGGIASARALHEARFLAEFFPHGTGFPPVTVGSLPDDLPRAD VQAFSIDDITTTEIDDAFSVEHLSDGRVRVGVHIAAPALGIVRGDAVDAIARARLSTVYMPGDKITMLPDDVVDVFTLKE GDYRPALSLYIIVNRETQDIVASETRAELVFVKSNLRHNTLDELVTEESLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRTQRGFGAPGPKRTRM QTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADHQRRMEY FWCLRWLAQEQKKQVVATVVKGDLVRLEEIPLLLHVPALGVHARGTRVLLEVMALDELTIEASVRLLHVLDAPVVTSGDA ADEDDEAGDDTLLDAQEASAQTEAEALAESDDGAPGADADAGASQQERAS
Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction [H]
COG id: COG0557
COG function: function code K; Exoribonuclease R
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI1787542, Length=355, Percent_Identity=27.0422535211268, Blast_Score=83, Evalue=7e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011129 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR022967 - InterPro: IPR013223 - InterPro: IPR001900 - InterPro: IPR022966 - InterPro: IPR004476 - InterPro: IPR011804 [H]
Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]
EC number: =3.1.13.1 [H]
Molecular weight: Translated: 75591; Mature: 75591
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADAA CCEEECCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHH AQQIDLDFLWECAPAEEFAYTALAEEYFGATYGPVERAALVLRLHGAPVYFRRKGRGQYQ HHHCCHHHEEECCCHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCCEEEEECCCCCCC RAPEEQLKMALASLERKRQQALVQAQYEEELKAGKLPDAFAGKVLGLLTRPDKNSIEYKA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEECCCCCCCHHHH LEAAAGARGVSPARLMLDCGGIASARALHEARFLAEFFPHGTGFPPVTVGSLPDDLPRAD HHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCC VQAFSIDDITTTEIDDAFSVEHLSDGRVRVGVHIAAPALGIVRGDAVDAIARARLSTVYM CEEEEECCCEECCCCCCCCHHCCCCCCEEEEEEEECCCHHEECCHHHHHHHHHHHHEEEE PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVNRETQDIVASETRAELVFVKSNLRHNT CCCEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHCCCCEEEEEEECCCCCCH LDELVTEESLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV HHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEE EGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRTQRGFGAPGPKRTRM ECCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCE QTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAV EECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEE VQGFDDTYTAYADHQRRMEYFWCLRWLAQEQKKQVVATVVKGDLVRLEEIPLLLHVPALG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHCCCCEEEEECCCC VHARGTRVLLEVMALDELTIEASVRLLHVLDAPVVTSGDAADEDDEAGDDTLLDAQEASA CCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCEECCCCCCCCCCCCCCCEECCHHHHH QTEAEALAESDDGAPGADADAGASQQERAS HHHHHHHHCCCCCCCCCCCCCCCCHHHCCC >Mature Secondary Structure MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADAA CCEEECCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHH AQQIDLDFLWECAPAEEFAYTALAEEYFGATYGPVERAALVLRLHGAPVYFRRKGRGQYQ HHHCCHHHEEECCCHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCCEEEEECCCCCCC RAPEEQLKMALASLERKRQQALVQAQYEEELKAGKLPDAFAGKVLGLLTRPDKNSIEYKA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEECCCCCCCHHHH LEAAAGARGVSPARLMLDCGGIASARALHEARFLAEFFPHGTGFPPVTVGSLPDDLPRAD HHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCC VQAFSIDDITTTEIDDAFSVEHLSDGRVRVGVHIAAPALGIVRGDAVDAIARARLSTVYM CEEEEECCCEECCCCCCCCHHCCCCCCEEEEEEEECCCHHEECCHHHHHHHHHHHHEEEE PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVNRETQDIVASETRAELVFVKSNLRHNT CCCEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHCCCCEEEEEEECCCCCCH LDELVTEESLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV HHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEE EGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRTQRGFGAPGPKRTRM ECCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCE QTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAV EECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEE VQGFDDTYTAYADHQRRMEYFWCLRWLAQEQKKQVVATVVKGDLVRLEEIPLLLHVPALG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHCCCCEEEEECCCC VHARGTRVLLEVMALDELTIEASVRLLHVLDAPVVTSGDAADEDDEAGDDTLLDAQEASA CCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCEECCCCCCCCCCCCCCCEECCHHHHH QTEAEALAESDDGAPGADADAGASQQERAS HHHHHHHHCCCCCCCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA