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The map label for this gene is qseD [H]

Identifier: 161525885

GI number: 161525885

Start: 2967428

End: 2968381

Strand: Reverse

Name: qseD [H]

Synonym: Bmul_2716

Alternate gene names: 161525885

Gene position: 2968381-2967428 (Counterclockwise)

Preceding gene: 161525887

Following gene: 161525884

Centisome position: 86.08

GC content: 69.92

Gene sequence:

>954_bases
ATGGAACTGAAATGGCTCGAAGATTTCGTCTCGCTCGCGGAGACGCGCAGCTTTAGCCGGTCCGCCGAGCTGCGGCACGT
GTCGCAGCCCGCGTTCTCGCGGCGCATCCAGGCGCTCGAAGCGTGGCTCGCCACCGAACTGATCGACCGCTCCGTCTATC
CGACGCGGCTCACGCAGGCCGGCCAGATCTTCTACGAGCAGGCGCTGACGATGCTGTCGCAGGCGCACGAGGCGCGCACG
CTGCTGCGCGGCCACGTCGGCGCGCCGGTGCCGACGATCGAGTTCGCGGTGCCGCACACGCTGTCGCTCACCTACTTCCC
GCGCTGGCTGCAGCGGATCGAGGCGAAGATGGGGCAGGTCCATACGCGGCTGCGCGCACTGAACGTGCACGACGCGGTGC
TGTCGCTCGTCGAGGGCGGCTGCGATCTCGTGATGGGCTATCACCATCCGAGCCACCCGGTCGCGCTGGACCCGGCCCGC
TACGACATGCTGATTCTCGGCAGCGAACCGATCAGCGCGTTCTCGGCGCCCGGCCGCGCGGGCCGGCCGCGCTACACGCT
GCCCGGCACGCCCGACGCGCGCGTGCCGTATCTGTCGTACACGCCGAACGCCTATCTCGGCCGCATGACCGAAGTCATCA
TCGCGAACGCGCCGACGCCGCTGTTTCTCGATCGCGTGTACGAAACCGACATGGCCGAAGGGCTGAAGGCGATGGCGCTC
GCGGGCCACGGCGTCGCGTTCCTGCCGCATAGCGCGGTCGAGGATGCGGTCGCGGGCGGCCGGCTGATCCGGCTCGACCG
CGCCGTGCGCGGCGGCGCACAGCCGTTCACGCTGACGATGGAGATCCGGCTCTACTGCGACAAGCTCGCGCTGCAGGGCG
AGGAGCCGCGCCAGAAGCTCGTGCGTGCGCTATGGGAGGTCGTGCGCGACGAACTGCGCGAGGCGGGCGGCTGA

Upstream 100 bases:

>100_bases
GCGCGCGCCGGCTCCGTCGCGCGCGGCCGCCTGCGATGGCCCCGCGCGGCGCCGGTAAAATGCAGCCTTCTTCCGCTCGC
CGCCTGCCGCGCCCGCCCGT

Downstream 100 bases:

>100_bases
GGCGTCGGCTGACGACGCGCTTGCAGCGGCTGACTGCACGCTGACCGCGGTGCACGTGCGCGCGGCGAACCGGGATTTTT
CGCGCGCGCGAAGCACGGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQIFYEQALTMLSQAHEART
LLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPAR
YDMLILGSEPISAFSAPGRAGRPRYTLPGTPDARVPYLSYTPNAYLGRMTEVIIANAPTPLFLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVAGGRLIRLDRAVRGGAQPFTLTMEIRLYCDKLALQGEEPRQKLVRALWEVVRDELREAGG

Sequences:

>Translated_317_residues
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQIFYEQALTMLSQAHEART
LLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPAR
YDMLILGSEPISAFSAPGRAGRPRYTLPGTPDARVPYLSYTPNAYLGRMTEVIIANAPTPLFLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVAGGRLIRLDRAVRGGAQPFTLTMEIRLYCDKLALQGEEPRQKLVRALWEVVRDELREAGG
>Mature_317_residues
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQIFYEQALTMLSQAHEART
LLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPAR
YDMLILGSEPISAFSAPGRAGRPRYTLPGTPDARVPYLSYTPNAYLGRMTEVIIANAPTPLFLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVAGGRLIRLDRAVRGGAQPFTLTMEIRLYCDKLALQGEEPRQKLVRALWEVVRDELREAGG

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=268, Percent_Identity=33.5820895522388, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI145693193, Length=281, Percent_Identity=25.2669039145907, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=151, Percent_Identity=31.1258278145695, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787879, Length=267, Percent_Identity=29.2134831460674, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35274; Mature: 35274

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GQIFYEQALTMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHH
HTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPARYDMLILGSEPISAFSAPGRA
HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCCCCCEEEECCCCCHHHCCCCCC
GRPRYTLPGTPDARVPYLSYTPNAYLGRMTEVIIANAPTPLFLDRVYETDMAEGLKAMAL
CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHH
AGHGVAFLPHSAVEDAVAGGRLIRLDRAVRGGAQPFTLTMEIRLYCDKLALQGEEPRQKL
CCCCEEECCCHHHHHHHCCCEEEEEHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHH
VRALWEVVRDELREAGG
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GQIFYEQALTMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHH
HTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPARYDMLILGSEPISAFSAPGRA
HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCCCCCEEEECCCCCHHHCCCCCC
GRPRYTLPGTPDARVPYLSYTPNAYLGRMTEVIIANAPTPLFLDRVYETDMAEGLKAMAL
CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHH
AGHGVAFLPHSAVEDAVAGGRLIRLDRAVRGGAQPFTLTMEIRLYCDKLALQGEEPRQKL
CCCCEEECCCHHHHHHHCCCEEEEEHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCHHHHH
VRALWEVVRDELREAGG
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]