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The map label for this gene is nodD1 [H]

Identifier: 161525850

GI number: 161525850

Start: 2928167

End: 2929087

Strand: Direct

Name: nodD1 [H]

Synonym: Bmul_2681

Alternate gene names: 161525850

Gene position: 2928167-2929087 (Clockwise)

Preceding gene: 161525848

Following gene: 161525854

Centisome position: 84.91

GC content: 73.51

Gene sequence:

>921_bases
ATGAATGCCGATGATATCGCCGGCCTCGACCTGAACCTGCTGAAGGTATTCGAGGCGCTCTACGAGGAAGGCGGCGCAAG
CCGCGCGGCGTTGCGGCTCGAGCTCACGCAGTCCGCGGTCAGCGCGGCGCTCGCGCGGCTGCGCGTCGTCTACGCCGATC
CGCTGTTCGTGCGCACCGGCCGCGGGCTCGCGCCGACGCCGCGCGCGGACGAGCTCAAGCCGATCCTGTCCGACGCGCTC
GATCGCTGCCGCGCGAGCCTCGCGATCGCGGCCGACGGCGGCGAGCGCGTCGGCCGCACGATCTCGATCGGGCTGTCGGA
CGACTTCGAAATCGCGCTCGGCCGCGCGCTGATCGATGCCGTCGCGCGCGATGCCGCCGGCATCCGGCTGATCTTCCGGC
AGACGCACAGCGGCATCGCGGGCGATGCGCTGCTGCGGCACGGCGTCGATATCGCGATCGCGTCCGGCGGCTTCTCGGCA
AACGGGCTCAGCCGCCGTGCGGTTGCGACGGGCGGCTACGCCTGCGTGATCGACCCGGCCGGGCGGGCGCGCACGCCGCG
CACGCTGACGCTCGACGACTATCTGCGGCGCGAGCACCTGCTCGTGTCGTCGGGCGGCGTGATCGGCATCGTCGACGAAG
CGCTGGCGGCGCTCGGACGCACGCGGCGCGTCGCGGCGTCGACCACGCACTTCGCGGCGCTGCCCTACCTGCTCGCGGGC
GCCGACGCGGTCGCGACGATCCCCGCGCATGCGGCACGCGCGATCGCGCAGGCGACGTCGCTGCGCTGCGTCGGCTGCCC
GCTCGAGCTACCGCGCTATCCCGTCGAGATCGGCTGGCGCACGAGCACGCAGCGCGATCCGGCGATCGTGCGCGTGCGCG
ACACGATCGCCGCGTGCGTCGAGCGGATCGTGCGCCCGTAA

Upstream 100 bases:

>100_bases
TGACGGATGTGGACATGAAAGCGTCTCCGGTAACGGGATGGGATGACGCCATCTTTATCGATATGATTTCATCGATCAAA
TCGATACGACGATAACTGAC

Downstream 100 bases:

>100_bases
ACGACCGGGGCCCGGCCGGCATCTGCCGGACGGGCCCCATTGTCGAACCGCATCCGGCCGCATCGCGCGGCCGGAGCGCT
CGCCTGCGCTACTCGACGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLELTQSAVSAALARLRVVYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRASLAIAADGGERVGRTISIGLSDDFEIALGRALIDAVARDAAGIRLIFRQTHSGIAGDALLRHGVDIAIASGGFSA
NGLSRRAVATGGYACVIDPAGRARTPRTLTLDDYLRREHLLVSSGGVIGIVDEALAALGRTRRVAASTTHFAALPYLLAG
ADAVATIPAHAARAIAQATSLRCVGCPLELPRYPVEIGWRTSTQRDPAIVRVRDTIAACVERIVRP

Sequences:

>Translated_306_residues
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLELTQSAVSAALARLRVVYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRASLAIAADGGERVGRTISIGLSDDFEIALGRALIDAVARDAAGIRLIFRQTHSGIAGDALLRHGVDIAIASGGFSA
NGLSRRAVATGGYACVIDPAGRARTPRTLTLDDYLRREHLLVSSGGVIGIVDEALAALGRTRRVAASTTHFAALPYLLAG
ADAVATIPAHAARAIAQATSLRCVGCPLELPRYPVEIGWRTSTQRDPAIVRVRDTIAACVERIVRP
>Mature_306_residues
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLELTQSAVSAALARLRVVYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRASLAIAADGGERVGRTISIGLSDDFEIALGRALIDAVARDAAGIRLIFRQTHSGIAGDALLRHGVDIAIASGGFSA
NGLSRRAVATGGYACVIDPAGRARTPRTLTLDDYLRREHLLVSSGGVIGIVDEALAALGRTRRVAASTTHFAALPYLLAG
ADAVATIPAHAARAIAQATSLRCVGCPLELPRYPVEIGWRTSTQRDPAIVRVRDTIAACVERIVRP

Specific function: Regulates the expression of the nod abcFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=299, Percent_Identity=25.752508361204, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87081684, Length=302, Percent_Identity=22.1854304635762, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786820, Length=65, Percent_Identity=50.7692307692308, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32228; Mature: 32228

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLELTQSAVSAALARLRVVYADPLFVRTG
CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHEEECCEEEECC
RGLAPTPRADELKPILSDALDRCRASLAIAADGGERVGRTISIGLSDDFEIALGRALIDA
CCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCHHCCCEEEECCCCCHHHHHHHHHHHH
VARDAAGIRLIFRQTHSGIAGDALLRHGVDIAIASGGFSANGLSRRAVATGGYACVIDPA
HHHCCCCEEEEEEHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCEEEEECCC
GRARTPRTLTLDDYLRREHLLVSSGGVIGIVDEALAALGRTRRVAASTTHFAALPYLLAG
CCCCCCCEEEHHHHHHHHEEEEECCCEEEEHHHHHHHHCCCHHHHHCCHHHHHHHHHHHC
ADAVATIPAHAARAIAQATSLRCVGCPLELPRYPVEIGWRTSTQRDPAIVRVRDTIAACV
CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHH
ERIVRP
HHHHCC
>Mature Secondary Structure
MNADDIAGLDLNLLKVFEALYEEGGASRAALRLELTQSAVSAALARLRVVYADPLFVRTG
CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHEEECCEEEECC
RGLAPTPRADELKPILSDALDRCRASLAIAADGGERVGRTISIGLSDDFEIALGRALIDA
CCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCHHCCCEEEECCCCCHHHHHHHHHHHH
VARDAAGIRLIFRQTHSGIAGDALLRHGVDIAIASGGFSANGLSRRAVATGGYACVIDPA
HHHCCCCEEEEEEHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCEEEEECCC
GRARTPRTLTLDDYLRREHLLVSSGGVIGIVDEALAALGRTRRVAASTTHFAALPYLLAG
CCCCCCCEEEHHHHHHHHEEEEECCCEEEEHHHHHHHHCCCHHHHHCCHHHHHHHHHHHC
ADAVATIPAHAARAIAQATSLRCVGCPLELPRYPVEIGWRTSTQRDPAIVRVRDTIAACV
CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHH
ERIVRP
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]