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The map label for this gene is rfaC [H]

Identifier: 161525580

GI number: 161525580

Start: 2623067

End: 2624059

Strand: Reverse

Name: rfaC [H]

Synonym: Bmul_2410

Alternate gene names: 161525580

Gene position: 2624059-2623067 (Counterclockwise)

Preceding gene: 161525582

Following gene: 161525572

Centisome position: 76.09

GC content: 71.4

Gene sequence:

>993_bases
GTGAACCGCATCCTCATCGTAAAAGTGACGTCGCTCGGCGATGTCGTCCAGACGCTGCCCGTCGTCGCGGACATCCATCG
CGCGTTTCCCGGCGTGACGGTCGATTGGGCCGTCGACGAATCGTGCGCGGAAGTCGTGCGCTGGCATCCCGGCGTCAGCA
CGGTGCTGTGCGCGCCGCTGCGGCGGTTCAAGAAGCTGCGCAACGGCGGCGACCTGAAGGCGATCACCGCCTCGATCGGC
GCGCTGCGCGCGCATCGCTACGACGCGGTAATCGACCTGCACGGCGTCTACAAGAGCGCGATCATCGCGGCGCTCGCGCG
CGCGGCGCGCCGCGTCGGCTATCAGACGCAGGATCTCGGCGAAACGGGCGCGCGCTTCGCGTACTCGCATCGCTTCGGCC
CGCGGCCGGCGTGCGACGCGTGGCACGGGATGCGCGTGAGCGCCGGCGAGGCGCTCGGCTACGTGCCGGAGGGCGCGGCG
ACGTACGGCATCGTCGCGCCGCAGCATGCGGATCTGCCGCCTGCCGTGACGAGCGGCGCGCCGTTCATGCTGCTGTTCCA
CGCGACGTCGAATCCCGACAAGAAATGGCCGGCCGACCGCTGGGCCGCGCTTGCGACGCGAATGATGGCGCGCGGGCTGC
GCGTGCTGCTGCCGTGGGGCTCGGCCGCCGAGCATGACGACGCGCAGGACATCGCCGCCAGGGCGCCCGGTGCGATCGTG
CTGCCCGCGATGTCGGTGCGCGCGCTCGGCGCGGCGATTGGCCGGGCGGCGCTCGTCGTCGGCGTCGATACGGGATTCGT
GCATATGGCGCACGCGCTTCGGCGGCCGACCGTGATGATCTTCGTCGCGACGTCGCGCCATCACTGCGGGATCGGCGGGG
CGCCGCATGCGTTGTCGATCGGCGAGCAGGGTGTCATGCCGACCGTCGACGATGCGCTCCGTGCGATCGATACGGTCGGG
CCCGCATACGGCGCCTTCGCGCGCGCGAGCTGA

Upstream 100 bases:

>100_bases
ACTGTCGCGACGCATTTTGTTGCAAGTGTAGTGAAATCGTAATATTTGCGCGCGCCAATCGTCTTTAGTATGCCGAAATG
GCCGGCTCTTCCCCGCAAAC

Downstream 100 bases:

>100_bases
CGCGCGCGGCGCACGGCCGTCGCGCTACGCGAGCAGCGCTTCGACGGTGACGACTGCGGCGATCGCCGCGAGGTTCGCGA
GCAGCGCCTCGAACACGAGG

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MNRILIVKVTSLGDVVQTLPVVADIHRAFPGVTVDWAVDESCAEVVRWHPGVSTVLCAPLRRFKKLRNGGDLKAITASIG
ALRAHRYDAVIDLHGVYKSAIIAALARAARRVGYQTQDLGETGARFAYSHRFGPRPACDAWHGMRVSAGEALGYVPEGAA
TYGIVAPQHADLPPAVTSGAPFMLLFHATSNPDKKWPADRWAALATRMMARGLRVLLPWGSAAEHDDAQDIAARAPGAIV
LPAMSVRALGAAIGRAALVVGVDTGFVHMAHALRRPTVMIFVATSRHHCGIGGAPHALSIGEQGVMPTVDDALRAIDTVG
PAYGAFARAS

Sequences:

>Translated_330_residues
MNRILIVKVTSLGDVVQTLPVVADIHRAFPGVTVDWAVDESCAEVVRWHPGVSTVLCAPLRRFKKLRNGGDLKAITASIG
ALRAHRYDAVIDLHGVYKSAIIAALARAARRVGYQTQDLGETGARFAYSHRFGPRPACDAWHGMRVSAGEALGYVPEGAA
TYGIVAPQHADLPPAVTSGAPFMLLFHATSNPDKKWPADRWAALATRMMARGLRVLLPWGSAAEHDDAQDIAARAPGAIV
LPAMSVRALGAAIGRAALVVGVDTGFVHMAHALRRPTVMIFVATSRHHCGIGGAPHALSIGEQGVMPTVDDALRAIDTVG
PAYGAFARAS
>Mature_330_residues
MNRILIVKVTSLGDVVQTLPVVADIHRAFPGVTVDWAVDESCAEVVRWHPGVSTVLCAPLRRFKKLRNGGDLKAITASIG
ALRAHRYDAVIDLHGVYKSAIIAALARAARRVGYQTQDLGETGARFAYSHRFGPRPACDAWHGMRVSAGEALGYVPEGAA
TYGIVAPQHADLPPAVTSGAPFMLLFHATSNPDKKWPADRWAALATRMMARGLRVLLPWGSAAEHDDAQDIAARAPGAIV
LPAMSVRALGAAIGRAALVVGVDTGFVHMAHALRRPTVMIFVATSRHHCGIGGAPHALSIGEQGVMPTVDDALRAIDTVG
PAYGAFARAS

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=282, Percent_Identity=34.0425531914894, Blast_Score=156, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 34914; Mature: 34914

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRILIVKVTSLGDVVQTLPVVADIHRAFPGVTVDWAVDESCAEVVRWHPGVSTVLCAPL
CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRFKKLRNGGDLKAITASIGALRAHRYDAVIDLHGVYKSAIIAALARAARRVGYQTQDLG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ETGARFAYSHRFGPRPACDAWHGMRVSAGEALGYVPEGAATYGIVAPQHADLPPAVTSGA
HHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEECEECCCCCCCCCCCCCCC
PFMLLFHATSNPDKKWPADRWAALATRMMARGLRVLLPWGSAAEHDDAQDIAARAPGAIV
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHCCCCEEE
LPAMSVRALGAAIGRAALVVGVDTGFVHMAHALRRPTVMIFVATSRHHCGIGGAPHALSI
ECHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEECC
GEQGVMPTVDDALRAIDTVGPAYGAFARAS
CCCCCCCCHHHHHHHHHHCCHHHCCCCCCC
>Mature Secondary Structure
MNRILIVKVTSLGDVVQTLPVVADIHRAFPGVTVDWAVDESCAEVVRWHPGVSTVLCAPL
CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRFKKLRNGGDLKAITASIGALRAHRYDAVIDLHGVYKSAIIAALARAARRVGYQTQDLG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ETGARFAYSHRFGPRPACDAWHGMRVSAGEALGYVPEGAATYGIVAPQHADLPPAVTSGA
HHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEECEECCCCCCCCCCCCCCC
PFMLLFHATSNPDKKWPADRWAALATRMMARGLRVLLPWGSAAEHDDAQDIAARAPGAIV
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHCCCCEEE
LPAMSVRALGAAIGRAALVVGVDTGFVHMAHALRRPTVMIFVATSRHHCGIGGAPHALSI
ECHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEECC
GEQGVMPTVDDALRAIDTVGPAYGAFARAS
CCCCCCCCHHHHHHHHHHCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]