Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 161524966

GI number: 161524966

Start: 1982707

End: 1984035

Strand: Reverse

Name: rbn [C]

Synonym: Bmul_1793

Alternate gene names: 161524966

Gene position: 1984035-1982707 (Counterclockwise)

Preceding gene: 161524968

Following gene: 161524964

Centisome position: 57.53

GC content: 68.25

Gene sequence:

>1329_bases
ATGCCGAAGTTGAGCGTCGATCTCGACACCATCAAGCGTCTCGCGCAGTTCGCCGCGCGGCGCAGCGCCGAAGACCGCAT
CCCGCAGGTGGCGGGCAGCCTCACGTTCACGACGATGCTGGCGCTCGTGCCGCTCGTGACGGTGGCGTTCGCGCTGTTCA
CCGCGTTTCCGATGTTCGCGTCGTTCCAGATCTCGCTGCAGGGCTTCCTCGCCGATCACCTGATGCCCGCGCAGTTCAAC
ATCCAGATCTTCAAGTATCTGAACCAGTTCGCGGCGAAGGCGAAGGGGCTGACGACGGCCGGCCTGATCGTACTGGTCGT
CACGTCGGTGATGACGATGATGACGATCGAGTCCGCCTTCAACCTGATCTGGCGCGTGCGCAAGCCGCGCCCGTTCGCGC
AGCGCGTGCTCGCGTACTGGGCGCTGATCACGCTCGGGCCGCTGCTGTTCGGCGTGAGTCTGTCGCTGTCGTCGTACTTG
TTTACGCAGTCGCTTGCGTTTACGGGCGCGGCGCCGTCGACGTCGATCGTCGAATGGCTGCTCACGCTCGCGTCGCTGCC
GCTCACGGTGCTCGCGTTCACGCTGCTGTACGTCTATCTGCCGAACTGCACGGTCGCGTGGCGCGACGCGGTGATCGGCG
GGTTGTTCGCCGCCGTCGCATTCGAGCTGGCAAAGCGCGGCTTCGGCTACTACGTGCGGCGCATTCCGACGTATACGGCC
GTCTACGGCGCGTTCGCCGCGCTGCCCGTGTTCCTGTTGTGGATGTATCTGAGTTGGTTCATCGCGCTGCTCGGCGCGAT
GGTCACGTCCGCGCTGCCGGCGATCCGGATCGGTCAGTTCCACCGCGTCGACTATCCGGGCAGCGACCTGCTCGACGCGC
TCGAACTGCTCGCGCGGCTCGCCGAAGCGCGCGCGGCCGGCAAGCCGGGCCGCAGCGCGATCCGGCTCGCGACGATGCTG
CGCTGCGACATGCAGACGGCGCAGCGCCTCCTGACCTTGCTGGAAGAACGGGAATGGGTCGCGCGCCTCGAGGGCGGCGA
GGACTCGCCGCGCTACATCCTGCTTGCGAATCCCGAGCGCCTGACGCTCGCGCAGCTGTTCGACGTGCTCGTGATCGACC
GCGCGGAGCTCACGTATCAGTTGCAGCGGCGGCGCAGCCATATCGACGGCGGCGCCTTGCTCGCGGTGCTGTCGAGCGAG
CGCTTCGACGTGACGCTCGCGTCGCTGATCGCCCCGCACCGGCTGTCCGGCGCGCAGCCGGCCGCGGCGTCCGAGCCGGC
GGCGGACGACGCGCCGGAGCCGCACGCGCATCCGCCGCGCACCGCGTGA

Upstream 100 bases:

>100_bases
AACCGGAATTCTACACTGTTCATCCATACAGTTATCCGAACCCAAGGCACTGTTTTCAAACGATTTCTATAACGGATTGA
AATAGGAAGAAACCCGCTTT

Downstream 100 bases:

>100_bases
GCGGGGCGGTGCGCGTTACAGCGGGATCTTTCCGGTACAGATGTCGCTGAACATCACCCAGTCGCCCATCAGGCTGTAGA
CCGGGTGGCGGAACGTCGCG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MPKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQISLQGFLADHLMPAQFN
IQIFKYLNQFAAKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSLSSYL
FTQSLAFTGAAPSTSIVEWLLTLASLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAVAFELAKRGFGYYVRRIPTYTA
VYGAFAALPVFLLWMYLSWFIALLGAMVTSALPAIRIGQFHRVDYPGSDLLDALELLARLAEARAAGKPGRSAIRLATML
RCDMQTAQRLLTLLEEREWVARLEGGEDSPRYILLANPERLTLAQLFDVLVIDRAELTYQLQRRRSHIDGGALLAVLSSE
RFDVTLASLIAPHRLSGAQPAAASEPAADDAPEPHAHPPRTA

Sequences:

>Translated_442_residues
MPKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQISLQGFLADHLMPAQFN
IQIFKYLNQFAAKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSLSSYL
FTQSLAFTGAAPSTSIVEWLLTLASLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAVAFELAKRGFGYYVRRIPTYTA
VYGAFAALPVFLLWMYLSWFIALLGAMVTSALPAIRIGQFHRVDYPGSDLLDALELLARLAEARAAGKPGRSAIRLATML
RCDMQTAQRLLTLLEEREWVARLEGGEDSPRYILLANPERLTLAQLFDVLVIDRAELTYQLQRRRSHIDGGALLAVLSSE
RFDVTLASLIAPHRLSGAQPAAASEPAADDAPEPHAHPPRTA
>Mature_441_residues
PKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQISLQGFLADHLMPAQFNI
QIFKYLNQFAAKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSLSSYLF
TQSLAFTGAAPSTSIVEWLLTLASLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAVAFELAKRGFGYYVRRIPTYTAV
YGAFAALPVFLLWMYLSWFIALLGAMVTSALPAIRIGQFHRVDYPGSDLLDALELLARLAEARAAGKPGRSAIRLATMLR
CDMQTAQRLLTLLEEREWVARLEGGEDSPRYILLANPERLTLAQLFDVLVIDRAELTYQLQRRRSHIDGGALLAVLSSER
FDVTLASLIAPHRLSGAQPAAASEPAADDAPEPHAHPPRTA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=257, Percent_Identity=39.6887159533074, Blast_Score=194, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48597; Mature: 48465

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA