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The map label for this gene is yfdE [H]

Identifier: 161524748

GI number: 161524748

Start: 1726905

End: 1728056

Strand: Reverse

Name: yfdE [H]

Synonym: Bmul_1575

Alternate gene names: 161524748

Gene position: 1728056-1726905 (Counterclockwise)

Preceding gene: 161524752

Following gene: 161524747

Centisome position: 50.11

GC content: 71.01

Gene sequence:

>1152_bases
ATGACGGAACACGAACGGCCGGGCGCGCTGGCGGGATTGCGCATCATCGATCTGTCGCGGGTGCTGGGCGGCCCGTACGC
GACGCAGATCCTCGCCGATCACGGCGCGGAGGTCATCAAGGTCGAACCGCCGTCCGGCGACGAGACGCGCACCTGGGGCC
CGCCGTTCGACGGCGACACCGCGTCGTACTTCCTCGGCGTGAACCGCAACAAGCTCGGCATCACGCTCGACCTGACCAAG
CCGGACGACCGCGAACGGCTGCTCGGACTACTCGACGAGGCCGACGCGCTCGTCGAGAACTTCCGGATCGGCACGATGGA
ACGCTGGGGGCTCGGCTTCGACGCGCTGCATGCGCGATTCCCGCGGCTCGTCTATTGCCGCGTGTCGGGTTTCGGCGCGG
ACGGCCCGCTCGGCGGGCTGCCCGGCTACGACGCGGCCGTGCAGGCGATGACGGGGTTGATGAGCGTAAACGGCGAAGCG
GGCGGTGCGCCGCTGCGCGTCGGCGTGCCGATCGTCGATCTCGTCACAGGGCTGAACGCGGCGCTCGGCGTGCTGATGGC
GCTGCGCGAACGCGACGCGAGCGGCCGCGGGCAGTTCGTCGAGACGACGCTGTTCGATTGCGCACTGTCGATCCTGCATC
CGCACACGCCGAACTTCTTCCATTCGGGCCGCGCGCCGGTGCGCACCGGCAACGCGCATCCGAACATCACGCCATACGAC
AGCTTTCCGACGGCGACCGTCGACATCTTTCTGGCCGTCGGCAACAACGGCCAGTTCGCGGCGCTCTGCGACGTGCTGGG
CACGCGCGACTGGCTCGACGATCCGCGTTTTGCGGACAACCGCGCGCGCAGCGCGAACCGCACGGCGCTGCGCGCGCTGC
TCGAAACGGCCCTAGCGGCCCACGACGGCGCGGCGCTCGCCGAGCGGCTGATGCGCAGCGGCGTGCCGTGCGCGCCGGTG
CTCGGGCTCGATGCGGCGCTCGCGCATCCGCACGTCGCGCATCGCGCGATGAAAGTGGCGCTCGGCGCGCATCGCGGCAT
TGCCTCGCCGATCAAGCTCGGCCGCACGCCGGCCACGTACCGGCGCGCGCCGCCCGCGCTGAACGAGCACGCGATGCAGC
TGTTCGGCGCCGACGACGACCGCACCGACTGA

Upstream 100 bases:

>100_bases
TTCACATACACGAATTATTCGTCGAGACCGGAACGGCATCCGCAGCGCCGCCGCCCGGCATCACCGGCGATCCGATCCAC
CGGAAGCAGGAGCGAGACGC

Downstream 100 bases:

>100_bases
CGCGCACATCCCGCACGCGGCGCGGCCGCCCACCGCATTCGACCGGAACGGCGCACCCGCGATGCGCCGCATCGACAGGA
GACACATCATGCTCGCATGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MTEHERPGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGITLDLTK
PDDRERLLGLLDEADALVENFRIGTMERWGLGFDALHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQAMTGLMSVNGEA
GGAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVETTLFDCALSILHPHTPNFFHSGRAPVRTGNAHPNITPYD
SFPTATVDIFLAVGNNGQFAALCDVLGTRDWLDDPRFADNRARSANRTALRALLETALAAHDGAALAERLMRSGVPCAPV
LGLDAALAHPHVAHRAMKVALGAHRGIASPIKLGRTPATYRRAPPALNEHAMQLFGADDDRTD

Sequences:

>Translated_383_residues
MTEHERPGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGITLDLTK
PDDRERLLGLLDEADALVENFRIGTMERWGLGFDALHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQAMTGLMSVNGEA
GGAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVETTLFDCALSILHPHTPNFFHSGRAPVRTGNAHPNITPYD
SFPTATVDIFLAVGNNGQFAALCDVLGTRDWLDDPRFADNRARSANRTALRALLETALAAHDGAALAERLMRSGVPCAPV
LGLDAALAHPHVAHRAMKVALGAHRGIASPIKLGRTPATYRRAPPALNEHAMQLFGADDDRTD
>Mature_382_residues
TEHERPGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGITLDLTKP
DDRERLLGLLDEADALVENFRIGTMERWGLGFDALHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQAMTGLMSVNGEAG
GAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVETTLFDCALSILHPHTPNFFHSGRAPVRTGNAHPNITPYDS
FPTATVDIFLAVGNNGQFAALCDVLGTRDWLDDPRFADNRARSANRTALRALLETALAAHDGAALAERLMRSGVPCAPVL
GLDAALAHPHVAHRAMKVALGAHRGIASPIKLGRTPATYRRAPPALNEHAMQLFGADDDRTD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=372, Percent_Identity=34.4086021505376, Blast_Score=239, Evalue=3e-63,
Organism=Homo sapiens, GI300863124, Length=325, Percent_Identity=36.6153846153846, Blast_Score=231, Evalue=8e-61,
Organism=Homo sapiens, GI13376042, Length=325, Percent_Identity=33.5384615384615, Blast_Score=199, Evalue=5e-51,
Organism=Homo sapiens, GI300863126, Length=372, Percent_Identity=30.6451612903226, Blast_Score=189, Evalue=5e-48,
Organism=Homo sapiens, GI266456254, Length=199, Percent_Identity=34.1708542713568, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI42794625, Length=199, Percent_Identity=34.1708542713568, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=34.1708542713568, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=34.1708542713568, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=35.4166666666667, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=35.4166666666667, Blast_Score=83, Evalue=5e-16,
Organism=Escherichia coli, GI87082093, Length=354, Percent_Identity=38.9830508474576, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1788717, Length=407, Percent_Identity=27.2727272727273, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786222, Length=336, Percent_Identity=25, Blast_Score=89, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=264, Percent_Identity=25.7575757575758, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=205, Percent_Identity=28.2926829268293, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648431, Length=381, Percent_Identity=37.5328083989501, Blast_Score=240, Evalue=9e-64,
Organism=Drosophila melanogaster, GI24585488, Length=203, Percent_Identity=32.0197044334975, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40820; Mature: 40689

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEHERPGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDT
CCCCCCCCCHHCCHHEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
ASYFLGVNRNKLGITLDLTKPDDRERLLGLLDEADALVENFRIGTMERWGLGFDALHARF
CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCC
PRLVYCRVSGFGADGPLGGLPGYDAAVQAMTGLMSVNGEAGGAPLRVGVPIVDLVTGLNA
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHH
ALGVLMALRERDASGRGQFVETTLFDCALSILHPHTPNFFHSGRAPVRTGNAHPNITPYD
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SFPTATVDIFLAVGNNGQFAALCDVLGTRDWLDDPRFADNRARSANRTALRALLETALAA
CCCCCEEEEEEEECCCCCCHHHHHHHCCHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHH
HDGAALAERLMRSGVPCAPVLGLDAALAHPHVAHRAMKVALGAHRGIASPIKLGRTPATY
CCCHHHHHHHHHCCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHH
RRAPPALNEHAMQLFGADDDRTD
HCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TEHERPGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDT
CCCCCCCCHHCCHHEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
ASYFLGVNRNKLGITLDLTKPDDRERLLGLLDEADALVENFRIGTMERWGLGFDALHARF
CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCC
PRLVYCRVSGFGADGPLGGLPGYDAAVQAMTGLMSVNGEAGGAPLRVGVPIVDLVTGLNA
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHH
ALGVLMALRERDASGRGQFVETTLFDCALSILHPHTPNFFHSGRAPVRTGNAHPNITPYD
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SFPTATVDIFLAVGNNGQFAALCDVLGTRDWLDDPRFADNRARSANRTALRALLETALAA
CCCCCEEEEEEEECCCCCCHHHHHHHCCHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHH
HDGAALAERLMRSGVPCAPVLGLDAALAHPHVAHRAMKVALGAHRGIASPIKLGRTPATY
CCCHHHHHHHHHCCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHH
RRAPPALNEHAMQLFGADDDRTD
HCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]