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The map label for this gene is ycfD [H]

Identifier: 161524358

GI number: 161524358

Start: 1299387

End: 1300613

Strand: Reverse

Name: ycfD [H]

Synonym: Bmul_1183

Alternate gene names: 161524358

Gene position: 1300613-1299387 (Counterclockwise)

Preceding gene: 161524360

Following gene: 161524346

Centisome position: 37.72

GC content: 66.91

Gene sequence:

>1227_bases
ATGCGCAACCGGTCTCAAGCCGAACCGCGGAACGCCGCTGCCGCGCCGCTCGGCGCGCCGCCTCCCGATCTTCCCACTCG
GCTGCTCGGCGGTCTCACCCCGGCGCAATTCATGCGCCGCTACTGGCAGAAAAAGCCGCTGCTGATCCGCCAGGCGATGC
CCGGCGTAAAGCCGCCCGTCACGCGCGACGCACTGTTCGACCTAGCTGCAGACTATGACGCCGAAGCGCGACTGATCACC
CATTTTCGTAACAAGTGGCAACTGGCGCACGGTCCGTTCGAGCCGGGCTCGCTGCCGGCCGTGACGCGCGACGCCTGGAC
GCTGCTCGTGCAGGGGCTCGACCTGCACGTCGACGCGGCGCGCGCGCTCCTCGACCGGTTCCGCTTCATCCCCGACGCGC
GTCTCGACGACCTGATGATCTCTTACGCGACAAACGGCGGCGGTGTCGGCCCGCACTTCGATTCGTATGATGTATTCCTG
CTGCAGGTCGAGGGTCGGCGGCGCTGGCGCATCGGCGCGCAGCAGGACCTGTCGCTGCAGGCCGGCGTGCCGCTGAAGAT
TCTCGCGAACTTCGAGCCGACCGACGAATGGGTGCTGGAGCCGGGCGACATGCTCTATCTGCCGCCGCATATCGCACACG
ACGGCGTCGCCGACGGCGAATGCATGACCTGCTCGATCGGCTTTCGCGCGCCGTCCGCCGGCGAACTCGGCGCACAGTTC
CTGTATTACCTGGCGGAGCGCGGCGGCCTGCGCGACAGCGGCGCCGACGACCTCTACCGCGACCCGAAGCAGCCTGCGGT
CGCGGCGCCGGCCGAGCTGCCGCCGGCAATGGTCGAGCGCGTCGCCGAGATCGTCGATGCGATTCGCTGGCGCAAGCGCG
ACGTCGCCGAATTTCTGGGCTGCTACCTGAGCGAACCGAAGTCGAACGTGGTGTTCGAGCCGCCGGCACGGCCGCTCTCG
GAAGCCGCATTCGTTGCGCAGGCATCACGGCGCGGCGTCCGTCTCGACAGACGCGCTGCATTGTTGTATAACGCGCGCTC
GTACTTCATCAACGGCGAGGAAGGTCCGCTCGAGGAGGCCGGAGAATGGCTGCCCGAGCTGGCAAATCAGCGCCAGATGG
AGGCGAAACGGTTTGTAACACTATCCCGGGTTCCCTCCATGACAGCCCTGCTACACGAGTGGTATCGTGCGGGCTGGATA
CGGGTCGGAAACCGGAATGAGTGGTAG

Upstream 100 bases:

>100_bases
ATCAGATTGCCTTGCGCATCCGACAGCTTGTAAGCGATCGACACGACAGTGTTTTTTGCGATTTTCATCCAATTCTCCCA
AATACAAGTCTCATTATACG

Downstream 100 bases:

>100_bases
CCGAACTGTTCGCCCATATGAATCAAATTTTGTATGGGAAAGACAACGTATTGACCCCGCATTTGTCGACGGTCGATAGG
AAAGTGCATATAATTTCCGC

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MRNRSQAEPRNAAAAPLGAPPPDLPTRLLGGLTPAQFMRRYWQKKPLLIRQAMPGVKPPVTRDALFDLAADYDAEARLIT
HFRNKWQLAHGPFEPGSLPAVTRDAWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATNGGGVGPHFDSYDVFL
LQVEGRRRWRIGAQQDLSLQAGVPLKILANFEPTDEWVLEPGDMLYLPPHIAHDGVADGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDSGADDLYRDPKQPAVAAPAELPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSNVVFEPPARPLS
EAAFVAQASRRGVRLDRRAALLYNARSYFINGEEGPLEEAGEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRNEW

Sequences:

>Translated_408_residues
MRNRSQAEPRNAAAAPLGAPPPDLPTRLLGGLTPAQFMRRYWQKKPLLIRQAMPGVKPPVTRDALFDLAADYDAEARLIT
HFRNKWQLAHGPFEPGSLPAVTRDAWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATNGGGVGPHFDSYDVFL
LQVEGRRRWRIGAQQDLSLQAGVPLKILANFEPTDEWVLEPGDMLYLPPHIAHDGVADGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDSGADDLYRDPKQPAVAAPAELPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSNVVFEPPARPLS
EAAFVAQASRRGVRLDRRAALLYNARSYFINGEEGPLEEAGEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRNEW
>Mature_408_residues
MRNRSQAEPRNAAAAPLGAPPPDLPTRLLGGLTPAQFMRRYWQKKPLLIRQAMPGVKPPVTRDALFDLAADYDAEARLIT
HFRNKWQLAHGPFEPGSLPAVTRDAWTLLVQGLDLHVDAARALLDRFRFIPDARLDDLMISYATNGGGVGPHFDSYDVFL
LQVEGRRRWRIGAQQDLSLQAGVPLKILANFEPTDEWVLEPGDMLYLPPHIAHDGVADGECMTCSIGFRAPSAGELGAQF
LYYLAERGGLRDSGADDLYRDPKQPAVAAPAELPPAMVERVAEIVDAIRWRKRDVAEFLGCYLSEPKSNVVFEPPARPLS
EAAFVAQASRRGVRLDRRAALLYNARSYFINGEEGPLEEAGEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWI
RVGNRNEW

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=372, Percent_Identity=33.8709677419355, Blast_Score=199, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 45656; Mature: 45656

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRSQAEPRNAAAAPLGAPPPDLPTRLLGGLTPAQFMRRYWQKKPLLIRQAMPGVKPPV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCC
TRDALFDLAADYDAEARLITHFRNKWQLAHGPFEPGSLPAVTRDAWTLLVQGLDLHVDAA
CHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
RALLDRFRFIPDARLDDLMISYATNGGGVGPHFDSYDVFLLQVEGRRRWRIGAQQDLSLQ
HHHHHHHHCCCCCCHHHEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEE
AGVPLKILANFEPTDEWVLEPGDMLYLPPHIAHDGVADGECMTCSIGFRAPSAGELGAQF
CCCCEEEEECCCCCHHHEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
LYYLAERGGLRDSGADDLYRDPKQPAVAAPAELPPAMVERVAEIVDAIRWRKRDVAEFLG
HHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CYLSEPKSNVVFEPPARPLSEAAFVAQASRRGVRLDRRAALLYNARSYFINGEEGPLEEA
HHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHEEECCEEEECCCCCCHHHH
GEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWIRVGNRNEW
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCC
>Mature Secondary Structure
MRNRSQAEPRNAAAAPLGAPPPDLPTRLLGGLTPAQFMRRYWQKKPLLIRQAMPGVKPPV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCC
TRDALFDLAADYDAEARLITHFRNKWQLAHGPFEPGSLPAVTRDAWTLLVQGLDLHVDAA
CHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
RALLDRFRFIPDARLDDLMISYATNGGGVGPHFDSYDVFLLQVEGRRRWRIGAQQDLSLQ
HHHHHHHHCCCCCCHHHEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEE
AGVPLKILANFEPTDEWVLEPGDMLYLPPHIAHDGVADGECMTCSIGFRAPSAGELGAQF
CCCCEEEEECCCCCHHHEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
LYYLAERGGLRDSGADDLYRDPKQPAVAAPAELPPAMVERVAEIVDAIRWRKRDVAEFLG
HHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CYLSEPKSNVVFEPPARPLSEAAFVAQASRRGVRLDRRAALLYNARSYFINGEEGPLEEA
HHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHEEECCEEEECCCCCCHHHH
GEWLPELANQRQMEAKRFVTLSRVPSMTALLHEWYRAGWIRVGNRNEW
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]