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The map label for this gene is yagI [H]

Identifier: 161524313

GI number: 161524313

Start: 1256670

End: 1257479

Strand: Reverse

Name: yagI [H]

Synonym: Bmul_1138

Alternate gene names: 161524313

Gene position: 1257479-1256670 (Counterclockwise)

Preceding gene: 161524326

Following gene: 161524311

Centisome position: 36.46

GC content: 67.16

Gene sequence:

>810_bases
ATGAACCAACCCACCCCGGATTCCAAAACGTCGATCCAGGTGATCGAACGCATGATGAGGCTGCTGGACGCGCTCGCCGC
TCACAGCGATCCCGTCAGCCTGAAGGAACTCGCGCAGCGCACGGAACTGCATCCGTCCACCGCGCATCGCATCCTGAACG
ACATGGTGACCTGCCGCCTCGTCGACCGCTCCGATCCCGGCACGTACCGGCTCGGCATGCGGCTGCTCGAACTCGGCAAC
CTCGTGAAGGCGCGCCTGTCGGTGCGCGATGCGGCGCTGATGCCGATGCGCGAGCTGCACCGCCTCACCGGCCAGACGGT
CAACCTGTCGGTCCGGCAAGGCGACGAGATCGTCTATATCGAACGTGCGTATTCGGAGCGCTCGGGCATGCAGGTCGTCC
GCGCGATCGGCGGCCGCGCGCCGCTGCATCTGACCTCCGTCGGCAAGCTGTTCCTCGCGGCCGACGAAACCTCGCGCGTA
CGCGCGTACGCGACGCGCACGGGGCTGTCCGGCCACACGCAGAACAGCATCACGGATCTGACCAAGCTCGAGCGCGAACT
GACGCTCGTGCGCCAGCAATCGTGCGCGCGCGACAACGAGGAGCTCGAGCTCGGCGTGCGTTGCATCGCGGCCGGCATCT
ACGACGATTCGGGCAAGCTCGTCGCGGGGCTGTCGCTGTCGGCGCCGGCCGATCGCCTGCAGGATGCGTGGATCAGCCAG
CTCAGCCGCACCGCGCTGACGATCTCCGAAGCGCTCGGCTATCGGCCGGAAGTCGTGAAGGAAGCGGAAGGCCTGCAACG
GCAGGCATGA

Upstream 100 bases:

>100_bases
CCGCAAGCGAGGACTTCCTCGAACAGCGTTCGCTTTTTTCACCATACGAGATACAATCGGTTCAACACCGCTTGCCGCGT
CAACTGATTCCCCCGCCGAC

Downstream 100 bases:

>100_bases
CGCGCCGCCACAGGCGCCGCAATGCAAAAAGCCCCGCTGTTGCGGGGCTTTTTTTCGACTTCGGGCGCGGCGACTGCAAC
GGCAGCGCCGCGTCGCGCGA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRV
RAYATRTGLSGHTQNSITDLTKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWISQ
LSRTALTISEALGYRPEVVKEAEGLQRQA

Sequences:

>Translated_269_residues
MNQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRV
RAYATRTGLSGHTQNSITDLTKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWISQ
LSRTALTISEALGYRPEVVKEAEGLQRQA
>Mature_269_residues
MNQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRV
RAYATRTGLSGHTQNSITDLTKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWISQ
LSRTALTISEALGYRPEVVKEAEGLQRQA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=253, Percent_Identity=33.201581027668, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1788131, Length=255, Percent_Identity=33.7254901960784, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789999, Length=250, Percent_Identity=30, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786715, Length=259, Percent_Identity=30.5019305019305, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082359, Length=243, Percent_Identity=30.4526748971193, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1790752, Length=230, Percent_Identity=27.8260869565217, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788581, Length=251, Percent_Identity=23.9043824701195, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29741; Mature: 29741

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHEEE
VDRSDPGTYRLGMRLLELGNLVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCEEEEE
ERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRVRAYATRTGLSGHTQNSITDL
EEHHCHHHHHHHHHHHCCCCCEEHHHHCCEEEECCCCHHHHHHHHHCCCCCCCCHHHHHH
TKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWISQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECEECCCCCEEEEEECCCCHHHHHHHHHHH
LSRTALTISEALGYRPEVVKEAEGLQRQA
HHHHHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHEEE
VDRSDPGTYRLGMRLLELGNLVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCEEEEE
ERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRVRAYATRTGLSGHTQNSITDL
EEHHCHHHHHHHHHHHCCCCCEEHHHHCCEEEECCCCHHHHHHHHHCCCCCCCCHHHHHH
TKLERELTLVRQQSCARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWISQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECEECCCCCEEEEEECCCCHHHHHHHHHHH
LSRTALTISEALGYRPEVVKEAEGLQRQA
HHHHHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]