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The map label for this gene is exbD1 [H]

Identifier: 161524252

GI number: 161524252

Start: 1175753

End: 1176184

Strand: Reverse

Name: exbD1 [H]

Synonym: Bmul_1076

Alternate gene names: 161524252

Gene position: 1176184-1175753 (Counterclockwise)

Preceding gene: 161524253

Following gene: 161524250

Centisome position: 34.11

GC content: 62.5

Gene sequence:

>432_bases
ATGGCAATGAATACCGGCTTCGGCGACGATGACGACGACGGCGTGATGAGCGAGATCAACATGACGCCGCTCGTCGACGT
CATGCTGGTCCTGCTGATCATTTTCCTCGTGACGATTCCGGCCATGCAGCATGCGGTGAAGATCGATCTGCCGCGCGCAA
GCAGTCAGCCCGTCGACGAGAAACCGCAGACGGTCGACGTCGCGATCCAGGGCGACGGCACGATCCTCTGGAACGACCAT
ACGGTTACGCGCGACCAGTTGCAGGCGCGCATCGCGGAAGCGGCGCAGCATCAGCCGCAACCGGAACTGCATCTGCGTGC
GGACCGCAAGGTCGCATACGAGCGCGTGGCCGAGGTGATGTCCGATGCGCAGGCAGGCGGCCTGACGAAGCTCGGCTTCG
TGACGGAACCGGGCGCGAAAGTAAAGAAGTAA

Upstream 100 bases:

>100_bases
GCCTGCACGCCTATTTCGTGACGGGCGAGCGTCTCGCATCGTCGTCGGATCGCAGCGGCCTGCGTCTCGCCGCGCGCGCC
AGCTGAAGCGGGGGCGAACC

Downstream 100 bases:

>100_bases
CGCAGCGCGCCGCCCAAAGTAAAAGGCCTTCATCGCCAGATGAAGGCCTTTTTTCATGCGCACGCGGGCGCCTTCGGGCG
GCGGGCTCTTCGGCGGTATC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAMNTGFGDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPRASSQPVDEKPQTVDVAIQGDGTILWNDH
TVTRDQLQARIAEAAQHQPQPELHLRADRKVAYERVAEVMSDAQAGGLTKLGFVTEPGAKVKK

Sequences:

>Translated_143_residues
MAMNTGFGDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPRASSQPVDEKPQTVDVAIQGDGTILWNDH
TVTRDQLQARIAEAAQHQPQPELHLRADRKVAYERVAEVMSDAQAGGLTKLGFVTEPGAKVKK
>Mature_142_residues
AMNTGFGDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPRASSQPVDEKPQTVDVAIQGDGTILWNDHT
VTRDQLQARIAEAAQHQPQPELHLRADRKVAYERVAEVMSDAQAGGLTKLGFVTEPGAKVKK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=134, Percent_Identity=37.3134328358209, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15614; Mature: 15483

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNTGFGDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPRASSQPVDE
CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC
KPQTVDVAIQGDGTILWNDHTVTRDQLQARIAEAAQHQPQPELHLRADRKVAYERVAEVM
CCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHH
SDAQAGGLTKLGFVTEPGAKVKK
HHHHCCCCEECCEEECCCCCCCC
>Mature Secondary Structure 
AMNTGFGDDDDDGVMSEINMTPLVDVMLVLLIIFLVTIPAMQHAVKIDLPRASSQPVDE
CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC
KPQTVDVAIQGDGTILWNDHTVTRDQLQARIAEAAQHQPQPELHLRADRKVAYERVAEVM
CCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHH
SDAQAGGLTKLGFVTEPGAKVKK
HHHHCCCCEECCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]