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The map label for this gene is ycdC [C]

Identifier: 161524128

GI number: 161524128

Start: 1038360

End: 1038992

Strand: Direct

Name: ycdC [C]

Synonym: Bmul_0952

Alternate gene names: 161524128

Gene position: 1038360-1038992 (Clockwise)

Preceding gene: 161524125

Following gene: 161524131

Centisome position: 30.11

GC content: 63.19

Gene sequence:

>633_bases
ATGAATCAGCCAAAAATCAAAAGAGATCCTGAAGGCACGCGCCGTCGCATCCTGATGGCGGCAGCCGAAGAGTTCGCGAG
TGGAGGGCTGTTCGGCGCGCGCGTCGATCAGATCGCGCGGCGCGCCGAGACCAACGAGCGCATGCTCTATTACTACTTCG
GCAGCAAGGAGCAGCTCTTCACCGCCGTGCTCGAACATGCGTTTTCCGCGCTGACCGAAGCCGAACGCGTGCTCGACCTC
GATGGCGTGCCGCCCGTCGAAGCGGTCACGCGGCTCGCGCATTTCGTTTGGGACTACTACCGCGACCATCCCGAGCTGCT
GCGGCTCATCAACAACGAAAACCTCCACGAAGCGCGCTATCTGCACAAGTCGACGCGCATCCGCGAGATGATGTCGCCGA
TCGTCGCGATGCTCGGCAACGTGCTGATGCGCGGCCAGAAGGCCGGGCTGTTTCGCGGCGACGTCGATCCGCTGCGCTTC
TACGTGACGCTGTCGGGGCTCGGCTACTACATCGTGTCGAACCGCTTCACGCTCGCTGCCACACTCGGCCGCGATTTCAG
CGAAGCCGACGAGCGCGCCGAGATGGTCCGGATGAACACCGAAGTGCTGCTCGCGTATCTGCTGCGGCGCTGA

Upstream 100 bases:

>100_bases
CAGGAGGGCGACTGTACGCGGTACGCCCGTTCCAAGGCGGCCGGCGCCGATGCGGTGGGGTGCCGGTCCGGATCACGCGG
CTCACACAGCAAAACGCCAC

Downstream 100 bases:

>100_bases
ACGAGCGCCCGCGCGATCGGCTTGCCGACGAAAAAAAGCGCCGCCGTGCTTGCGCAGGGCGGCGCTTTGCTTTGAACGAG
CCGCGCGTCAGGCGGCCTTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; TetR Family Protein Regulatory Protein; Transcriptional Regulator Tetr Family; Regulatory Protein; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALTEAERVLDL
DGVPPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARYLHKSTRIREMMSPIVAMLGNVLMRGQKAGLFRGDVDPLRF
YVTLSGLGYYIVSNRFTLAATLGRDFSEADERAEMVRMNTEVLLAYLLRR

Sequences:

>Translated_210_residues
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALTEAERVLDL
DGVPPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARYLHKSTRIREMMSPIVAMLGNVLMRGQKAGLFRGDVDPLRF
YVTLSGLGYYIVSNRFTLAATLGRDFSEADERAEMVRMNTEVLLAYLLRR
>Mature_210_residues
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALTEAERVLDL
DGVPPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARYLHKSTRIREMMSPIVAMLGNVLMRGQKAGLFRGDVDPLRF
YVTLSGLGYYIVSNRFTLAATLGRDFSEADERAEMVRMNTEVLLAYLLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24208; Mature: 24208

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLF
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
TAVLEHAFSALTEAERVLDLDGVPPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHH
LHKSTRIREMMSPIVAMLGNVLMRGQKAGLFRGDVDPLRFYVTLSGLGYYIVSNRFTLAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEEH
TLGRDFSEADERAEMVRMNTEVLLAYLLRR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNQPKIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLF
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
TAVLEHAFSALTEAERVLDLDGVPPVEAVTRLAHFVWDYYRDHPELLRLINNENLHEARY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHH
LHKSTRIREMMSPIVAMLGNVLMRGQKAGLFRGDVDPLRFYVTLSGLGYYIVSNRFTLAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEEH
TLGRDFSEADERAEMVRMNTEVLLAYLLRR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA