Click here to switch to the map view.

The map label for this gene is ycfQ [H]

Identifier: 161524083

GI number: 161524083

Start: 988908

End: 989543

Strand: Reverse

Name: ycfQ [H]

Synonym: Bmul_0904

Alternate gene names: 161524083

Gene position: 989543-988908 (Counterclockwise)

Preceding gene: 161524085

Following gene: 161524081

Centisome position: 28.7

GC content: 70.6

Gene sequence:

>636_bases
ATGGCCGAACGGGGCCGACCGAGAAGCTTCGACAAGGACGCTGCGCTGGAATGCGCGATGCAGGTGTTCTGGCGCCTCGG
CTACGAAGGCGCGTCGATGGCGGACCTGACGTCCGCGATGGGGATTGCGTCGCCGAGCCTGTATGCGGCGTTCGGCAGCA
AGGAAGCGCTGTTCCGGCAGGCGCTCGAGCACTACCGCGAGACCGAGGGCCGCGAGATCTGGGATGGCGTCGAACGGGCC
GATACGGCCTACGACGCGATACGGAACTACCTGATGCAGACGGCGCGCGTGTTCACGCGGCGCTCGAAGCCGGCCGGCTG
CCTGATCGTGCTGTCGGCGTTGCATCCGGCCGAGCGGTCGGACACGGTGCGGCAGACGCTGATCGAGATGCGCGAAGAGA
CGGTCGACGCGTTGCGCGTGCGTCTGCGCGCAGCGGCGGCGGCCGGCGAGATCGCCGCGCAAGCGAATGTGGATGCGATC
GCGCGGTACTACGTGACGGTTCAGCAGGGCATGTCGATCCAGGCGCGCGACGGCGCGAGCCGCCGCGATCTGGAAGCGGT
CGCGCACGCCGCGCTGGCCGCATGGCCGGCGCTGACCGGCGCGGGCACGGGCGCCGCGCTGCCCGCGCAGTCGTGA

Upstream 100 bases:

>100_bases
AATTTATGTAACGGTCAACACAGAATGTGGCAAGTTGCGCGGCGCTGTCAATTGAATTATTTTATCGATCGATACAGATA
TTGACGATGGAGCGTATGCC

Downstream 100 bases:

>100_bases
TCGCGCGGCGCCGCGCCCGGCGAATGCGTTAGCGGCCGACTGCCTGCTGAACGTCCTTTGACGCGTGCCATACGCGATAG
CGCACGTCGAAACCGTCCGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MAERGRPRSFDKDAALECAMQVFWRLGYEGASMADLTSAMGIASPSLYAAFGSKEALFRQALEHYRETEGREIWDGVERA
DTAYDAIRNYLMQTARVFTRRSKPAGCLIVLSALHPAERSDTVRQTLIEMREETVDALRVRLRAAAAAGEIAAQANVDAI
ARYYVTVQQGMSIQARDGASRRDLEAVAHAALAAWPALTGAGTGAALPAQS

Sequences:

>Translated_211_residues
MAERGRPRSFDKDAALECAMQVFWRLGYEGASMADLTSAMGIASPSLYAAFGSKEALFRQALEHYRETEGREIWDGVERA
DTAYDAIRNYLMQTARVFTRRSKPAGCLIVLSALHPAERSDTVRQTLIEMREETVDALRVRLRAAAAAGEIAAQANVDAI
ARYYVTVQQGMSIQARDGASRRDLEAVAHAALAAWPALTGAGTGAALPAQS
>Mature_210_residues
AERGRPRSFDKDAALECAMQVFWRLGYEGASMADLTSAMGIASPSLYAAFGSKEALFRQALEHYRETEGREIWDGVERAD
TAYDAIRNYLMQTARVFTRRSKPAGCLIVLSALHPAERSDTVRQTLIEMREETVDALRVRLRAAAAAGEIAAQANVDAIA
RYYVTVQQGMSIQARDGASRRDLEAVAHAALAAWPALTGAGTGAALPAQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=200, Percent_Identity=37.5, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082397, Length=187, Percent_Identity=31.0160427807487, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22910; Mature: 22779

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERGRPRSFDKDAALECAMQVFWRLGYEGASMADLTSAMGIASPSLYAAFGSKEALFRQ
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHH
ALEHYRETEGREIWDGVERADTAYDAIRNYLMQTARVFTRRSKPAGCLIVLSALHPAERS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCH
DTVRQTLIEMREETVDALRVRLRAAAAAGEIAAQANVDAIARYYVTVQQGMSIQARDGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCCC
RRDLEAVAHAALAAWPALTGAGTGAALPAQS
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AERGRPRSFDKDAALECAMQVFWRLGYEGASMADLTSAMGIASPSLYAAFGSKEALFRQ
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHH
ALEHYRETEGREIWDGVERADTAYDAIRNYLMQTARVFTRRSKPAGCLIVLSALHPAERS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCH
DTVRQTLIEMREETVDALRVRLRAAAAAGEIAAQANVDAIARYYVTVQQGMSIQARDGAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCCC
RRDLEAVAHAALAAWPALTGAGTGAALPAQS
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]