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The map label for this gene is cobD [H]

Identifier: 161524025

GI number: 161524025

Start: 921935

End: 922879

Strand: Reverse

Name: cobD [H]

Synonym: Bmul_0846

Alternate gene names: 161524025

Gene position: 922879-921935 (Counterclockwise)

Preceding gene: 161524026

Following gene: 161524024

Centisome position: 26.76

GC content: 75.24

Gene sequence:

>945_bases
ATGCTGATGCTGTCGCTGCCGATCGTCGCGATGCTCGCGGTCGCGGCCGCGTTCGTCGACCGCGTATTCGGCGAGCCGGC
CGGCTGGCATCCGCTCGTCGCGTTCGGCCGGCTCGCGGCACGCATCGAGGCCGCGCTGAACACCGGCCGGCGCGGCCGCC
TCGCCGGCGTGGCCGCATGGGCGGCGGCCGTCGTGCCGCCGGTCGTGCTCGCCGCCCTGCTCGCGGCCGCCCTGCCGTGG
CCGCTCGCGGCCGCGCTGCACGTCGCGCTGCTCTGGTTCGCGCTCGGCGCGAAGAGCCTCGCCGACCACGTCGCGCCGAT
CGCCGCTGCGCTGCTGCGCCACGACCTCGACGCCGCGCGCACGCTGACCGCGCGCATCGTGTCGCGCGACACGAGTGCGG
CCGACGACGAAGCGCTGTCGCGTGCGGCCGTCGAATCGGCGCTCGAAAACGGCAACGATGCGATCTTCGGCGCGCTGTTC
TGGTTCGTCGTCGCGGGCGGCCCGGGCGCATTGCTGTTCCGCCTCGCGAACACGCTCGACGCGATGTGGGGCTACCGCAC
GCCGCGCTTCGCGACGTTCGGCTGGGCCGCCGCACGCATCGACGACGCGCTGAACTGGATCCCCGCGCGTCTGACCGCAG
CGAGCTACGCGCTGCTCGGCGACACGGCCGCCGCCTGGCGCTGCTGGCGCACGCAGGCGCACCGCTGGGACAGCCCGAAC
GCGGGCCCCGTGATGGCGGCCGGCGCGGGCAGCCTGAACGTGCGGCTCGGCGGCCCGGCCGTCTATCACGGCGCGCTCGA
GGATCGCCCCACGCTCGGTACCGGCGCACACGCGACGGCCGCGCACGTCGTCGCCGCGCTCTCGCTCGTCACGCGCACGC
TCGCACTGTGGCTCGCGCTGCTCGTCGCGAGCGCCGCGCTCGTCATGGCCGCTCATCATGTCTGA

Upstream 100 bases:

>100_bases
ACGAACTCGGGCGGCTGAACCAGCGCATCGCGGCGCTCGCGACGCGCGTGATGCTGCTCGTCGCGGGCCTGCCGCTCGAC
ATCAAGCCGGGAGCGCCGAC

Downstream 100 bases:

>100_bases
TACTCCGATCGCGCACGGCGGCAATCTGCACGAAGCCGCGCGCCGCTACGGCATTCCCTACGATGCATGGCTCGACCTGT
CGACCGGCATCAATCCGCTC

Product: cobalamin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLMLSLPIVAMLAVAAAFVDRVFGEPAGWHPLVAFGRLAARIEAALNTGRRGRLAGVAAWAAAVVPPVVLAALLAAALPW
PLAAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAARTLTARIVSRDTSAADDEALSRAAVESALENGNDAIFGALF
WFVVAGGPGALLFRLANTLDAMWGYRTPRFATFGWAAARIDDALNWIPARLTAASYALLGDTAAAWRCWRTQAHRWDSPN
AGPVMAAGAGSLNVRLGGPAVYHGALEDRPTLGTGAHATAAHVVAALSLVTRTLALWLALLVASAALVMAAHHV

Sequences:

>Translated_314_residues
MLMLSLPIVAMLAVAAAFVDRVFGEPAGWHPLVAFGRLAARIEAALNTGRRGRLAGVAAWAAAVVPPVVLAALLAAALPW
PLAAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAARTLTARIVSRDTSAADDEALSRAAVESALENGNDAIFGALF
WFVVAGGPGALLFRLANTLDAMWGYRTPRFATFGWAAARIDDALNWIPARLTAASYALLGDTAAAWRCWRTQAHRWDSPN
AGPVMAAGAGSLNVRLGGPAVYHGALEDRPTLGTGAHATAAHVVAALSLVTRTLALWLALLVASAALVMAAHHV
>Mature_314_residues
MLMLSLPIVAMLAVAAAFVDRVFGEPAGWHPLVAFGRLAARIEAALNTGRRGRLAGVAAWAAAVVPPVVLAALLAAALPW
PLAAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAARTLTARIVSRDTSAADDEALSRAAVESALENGNDAIFGALF
WFVVAGGPGALLFRLANTLDAMWGYRTPRFATFGWAAARIDDALNWIPARLTAASYALLGDTAAAWRCWRTQAHRWDSPN
AGPVMAAGAGSLNVRLGGPAVYHGALEDRPTLGTGAHATAAHVVAALSLVTRTLALWLALLVASAALVMAAHHV

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 32645; Mature: 32645

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMLSLPIVAMLAVAAAFVDRVFGEPAGWHPLVAFGRLAARIEAALNTGRRGRLAGVAAW
CEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AAAVVPPVVLAALLAAALPWPLAAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAAR
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTARIVSRDTSAADDEALSRAAVESALENGNDAIFGALFWFVVAGGPGALLFRLANTLD
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AMWGYRTPRFATFGWAAARIDDALNWIPARLTAASYALLGDTAAAWRCWRTQAHRWDSPN
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
AGPVMAAGAGSLNVRLGGPAVYHGALEDRPTLGTGAHATAAHVVAALSLVTRTLALWLAL
CCCEEEECCCEEEEEECCCHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVASAALVMAAHHV
HHHHHHHHHHHHCC
>Mature Secondary Structure
MLMLSLPIVAMLAVAAAFVDRVFGEPAGWHPLVAFGRLAARIEAALNTGRRGRLAGVAAW
CEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AAAVVPPVVLAALLAAALPWPLAAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAAR
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTARIVSRDTSAADDEALSRAAVESALENGNDAIFGALFWFVVAGGPGALLFRLANTLD
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AMWGYRTPRFATFGWAAARIDDALNWIPARLTAASYALLGDTAAAWRCWRTQAHRWDSPN
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
AGPVMAAGAGSLNVRLGGPAVYHGALEDRPTLGTGAHATAAHVVAALSLVTRTLALWLAL
CCCEEEECCCEEEEEECCCHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVASAALVMAAHHV
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA