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The map label for this gene is ybiR [H]

Identifier: 161523277

GI number: 161523277

Start: 104158

End: 105294

Strand: Direct

Name: ybiR [H]

Synonym: Bmul_0097

Alternate gene names: 161523277

Gene position: 104158-105294 (Clockwise)

Preceding gene: 161523276

Following gene: 161523278

Centisome position: 3.02

GC content: 68.07

Gene sequence:

>1137_bases
ATGTCGATTCACGACACGGGTGCACCGGCGCCGCGCCGGTGGCTCGGCTGGCTTGCACAGGAGCCCGTGCTGTCCGTGCT
GGCGCTCGGCCTGATCGTGCTGGAATGGTTGCGTCCGCAACCGATTCGCGTGCTGGCCGAGCGCGTCGACTGGCAGACGG
TCGCGACGCTCGCGGGCCTGTTGATGCTGACGAAGGCGCTCGAACTGTCGGGCTGCCTGATGTGGCTCGCGCACCGGATC
GTGCATCACGTGCGTTCCGAGCGCGGGCTCGCGATGCTGCTCGTCGTGTTCGCGGCCGTGCTCTCGATGTGGCTGACGAA
CGACGTCGCGCTGTTCGTCGTCGTGCCGCTGATGGTGTCGTTGCGCGAGCTGACGCCGCTGCCGTTCCGGCGCCTCGTGA
TCGTCGTCGCGCTGGCCGTCAACGCGGGATCGATCGCAACGCCGCTCGGCAATCCGCAAAATCTCTTTCTATGGCAGTTG
AGCGGCGTGTCGTTCGGCCGCTTCGTCGTCACGCTCGGGCCGCTCGCCGTCGCGCTGATGGTGCTGCTGCTCGCGCTGAC
CGCATGCGCGTTTCGCGCGAAACCGCTCGATCTGTCCGGCGACGTCGCGGGCGTCGACGTGCACCGCGCGCACGCGCTGA
TCGCGGCCGTGCTGTTCGCCGCATTCGTGCTGCTGGCCGACGCGCATCATCCGCTGCCGGCGCTGATCGCGGTGACGATC
GTGCTGCTCGCCGTTCAACGCAAGGCAGTCCTGAAGATCGACTGGCTGCTGCTGCTGATTTTCGTGCTGATGTTCGTCGT
GCTGCGCACGGCCGCGGCGCTGCCGTGGATACACGACGCGATCGCGCACGCGCGGCTCGATTCGCCGCTGCGCGTGTTCG
CGGCGGGCGCGATCCTGTCGCAGGGCATCAGCAACGTGCCGGCCGCGATCCTGCTGTCGGAGTTCACGCACGACTGGCGT
GCGCTCGCGTTCGGCGTATCGGTCGGCGGCTTCGGATTCGCGATCGGCTCGCTCGCGAATCTGATCGCGGTCCGTCTCGC
GAAGGAGCCGCGCATGTGGCTGCCGTTCCATCTCGTGTCGATTCCGTTCGCGCTCGTGAGCGCCGTGCTCGGCGCATGGC
TGCTCGCGCATCTCTGA

Upstream 100 bases:

>100_bases
GGGCGAGGGCAGGTGACGATCGACTTCGGCAACCTCGATGCGCTCGAAGGCATTCTCGTGCGCCTGCGCGGCAACGTCGC
GGCCGAGGAATAACGGGAGC

Downstream 100 bases:

>100_bases
CGATCGCTGCACAGGATCTCGGCTGGTCTCGGCGGTGACGATGCACAGCTTGCGCTGTGCCCGCGCGCGCGGCGCGCGAA
GGACGCGGGCGGACACGGCG

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSIHDTGAPAPRRWLGWLAQEPVLSVLALGLIVLEWLRPQPIRVLAERVDWQTVATLAGLLMLTKALELSGCLMWLAHRI
VHHVRSERGLAMLLVVFAAVLSMWLTNDVALFVVVPLMVSLRELTPLPFRRLVIVVALAVNAGSIATPLGNPQNLFLWQL
SGVSFGRFVVTLGPLAVALMVLLLALTACAFRAKPLDLSGDVAGVDVHRAHALIAAVLFAAFVLLADAHHPLPALIAVTI
VLLAVQRKAVLKIDWLLLLIFVLMFVVLRTAAALPWIHDAIAHARLDSPLRVFAAGAILSQGISNVPAAILLSEFTHDWR
ALAFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVSIPFALVSAVLGAWLLAHL

Sequences:

>Translated_378_residues
MSIHDTGAPAPRRWLGWLAQEPVLSVLALGLIVLEWLRPQPIRVLAERVDWQTVATLAGLLMLTKALELSGCLMWLAHRI
VHHVRSERGLAMLLVVFAAVLSMWLTNDVALFVVVPLMVSLRELTPLPFRRLVIVVALAVNAGSIATPLGNPQNLFLWQL
SGVSFGRFVVTLGPLAVALMVLLLALTACAFRAKPLDLSGDVAGVDVHRAHALIAAVLFAAFVLLADAHHPLPALIAVTI
VLLAVQRKAVLKIDWLLLLIFVLMFVVLRTAAALPWIHDAIAHARLDSPLRVFAAGAILSQGISNVPAAILLSEFTHDWR
ALAFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVSIPFALVSAVLGAWLLAHL
>Mature_377_residues
SIHDTGAPAPRRWLGWLAQEPVLSVLALGLIVLEWLRPQPIRVLAERVDWQTVATLAGLLMLTKALELSGCLMWLAHRIV
HHVRSERGLAMLLVVFAAVLSMWLTNDVALFVVVPLMVSLRELTPLPFRRLVIVVALAVNAGSIATPLGNPQNLFLWQLS
GVSFGRFVVTLGPLAVALMVLLLALTACAFRAKPLDLSGDVAGVDVHRAHALIAAVLFAAFVLLADAHHPLPALIAVTIV
LLAVQRKAVLKIDWLLLLIFVLMFVVLRTAAALPWIHDAIAHARLDSPLRVFAAGAILSQGISNVPAAILLSEFTHDWRA
LAFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVSIPFALVSAVLGAWLLAHL

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=327, Percent_Identity=41.8960244648318, Blast_Score=219, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40831; Mature: 40700

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIHDTGAPAPRRWLGWLAQEPVLSVLALGLIVLEWLRPQPIRVLAERVDWQTVATLAGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LMLTKALELSGCLMWLAHRIVHHVRSERGLAMLLVVFAAVLSMWLTNDVALFVVVPLMVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LRELTPLPFRRLVIVVALAVNAGSIATPLGNPQNLFLWQLSGVSFGRFVVTLGPLAVALM
HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
VLLLALTACAFRAKPLDLSGDVAGVDVHRAHALIAAVLFAAFVLLADAHHPLPALIAVTI
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VLLAVQRKAVLKIDWLLLLIFVLMFVVLRTAAALPWIHDAIAHARLDSPLRVFAAGAILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QGISNVPAAILLSEFTHDWRALAFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IPFALVSAVLGAWLLAHL
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SIHDTGAPAPRRWLGWLAQEPVLSVLALGLIVLEWLRPQPIRVLAERVDWQTVATLAGL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LMLTKALELSGCLMWLAHRIVHHVRSERGLAMLLVVFAAVLSMWLTNDVALFVVVPLMVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LRELTPLPFRRLVIVVALAVNAGSIATPLGNPQNLFLWQLSGVSFGRFVVTLGPLAVALM
HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
VLLLALTACAFRAKPLDLSGDVAGVDVHRAHALIAAVLFAAFVLLADAHHPLPALIAVTI
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VLLAVQRKAVLKIDWLLLLIFVLMFVVLRTAAALPWIHDAIAHARLDSPLRVFAAGAILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QGISNVPAAILLSEFTHDWRALAFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IPFALVSAVLGAWLLAHL
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]