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The map label for this gene is fliN [H]

Identifier: 161523222

GI number: 161523222

Start: 47038

End: 47517

Strand: Reverse

Name: fliN [H]

Synonym: Bmul_0042

Alternate gene names: 161523222

Gene position: 47517-47038 (Counterclockwise)

Preceding gene: 161523223

Following gene: 161523221

Centisome position: 1.38

GC content: 68.54

Gene sequence:

>480_bases
ATGACTGAGCTGAACCCGACGCCGGAACTCGACCCGCAGGCGCTCGCCGATGCCGCGCTGGCGGATTCCGCGGGCGCGCA
GCAGGCGGCCGACGCCGATCCGGCAATGGACGACTGGGCCGCGGCGCTCGCCGAGCAGAACCATCAGCCGGTGCAGGCCG
GCGCCACGGGCGCGGGCGTGTTCCAGCCGCTGTCGAAGGCCGCGGCCAGCTCGACGCACAACGACATCGAGATGATCCTC
GATATCCCGGTCAAGATGACCGTGGAGCTCGGCCGCACGAAGATCGCGATCCGCAACCTGCTGCAGCTCGCGCAGGGCTC
GGTCGTCGAGCTCGACGGGCTCGCCGGCGAGCCGATGGACGTGCTCGTGAACGGTTGCCTGATCGCGCAGGGCGAGGTCG
TCGTCGTCAACGACAAGTTCGGGATCCGGCTGACCGACATCATCACGCCGTCCGAACGCATCCGGAAGCTGAATCGATGA

Upstream 100 bases:

>100_bases
GTGCCGGTGATGGAATGCGGCTACGGGATTTTCAATGGCCAATATGCGCTGCGCGTGCAGAAGATGATCAGCGCGAGCGA
CACGATGAAGGAAGGTGGAT

Downstream 100 bases:

>100_bases
GCGTCGCGCCGTCCGGCCGCCGCGCTGCGTTCGCGGCCGCGGCCGCGTGTGCGGCGTCGGCCGTCGGCATGCCGGCGTGC
GCCGCCGATCTGAACGCCGT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MTELNPTPELDPQALADAALADSAGAQQAADADPAMDDWAAALAEQNHQPVQAGATGAGVFQPLSKAAASSTHNDIEMIL
DIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR

Sequences:

>Translated_159_residues
MTELNPTPELDPQALADAALADSAGAQQAADADPAMDDWAAALAEQNHQPVQAGATGAGVFQPLSKAAASSTHNDIEMIL
DIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
>Mature_158_residues
TELNPTPELDPQALADAALADSAGAQQAADADPAMDDWAAALAEQNHQPVQAGATGAGVFQPLSKAAASSTHNDIEMILD
IPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=132, Percent_Identity=60.6060606060606, Blast_Score=159, Evalue=9e-41,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 16703; Mature: 16572

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELNPTPELDPQALADAALADSAGAQQAADADPAMDDWAAALAEQNHQPVQAGATGAGV
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
FQPLSKAAASSTHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMD
HHHHHHHHHCCCCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHH
VLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
HHHCCEEEECCCEEEEECCCCEEEEEEECCHHHHHHCCC
>Mature Secondary Structure 
TELNPTPELDPQALADAALADSAGAQQAADADPAMDDWAAALAEQNHQPVQAGATGAGV
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
FQPLSKAAASSTHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMD
HHHHHHHHHCCCCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHH
VLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
HHHCCEEEECCCEEEEECCCCEEEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]