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The map label for this gene is rbsD [H]

Identifier: 161508532

GI number: 161508532

Start: 315335

End: 315739

Strand: Reverse

Name: rbsD [H]

Synonym: USA300HOU_0281

Alternate gene names: 161508532

Gene position: 315739-315335 (Counterclockwise)

Preceding gene: 161508533

Following gene: 161508531

Centisome position: 10.99

GC content: 31.85

Gene sequence:

>405_bases
ATGAAAAAATCAGCTATTTTAAATGAACATATTTCAAAAGCAATCGCGACAATTGGTCATTTTGATTTATTAACGATTAA
TGACGCTGGCATGCCAATTCCAAATGATCATCGTCGTATCGACCTAGCTGTAACTAAAAACTTACCACGCTTTATTGATG
TCTTAGCTACAGTGTTAGAAGAAATGGAAATCCAAAAAATATACTTAGCAGAAGAAATAAAAGAACATAACCCTACACAA
TTGCAACAAATTAAACAATTGATTTCATCGGAAATCGAAATCATTTTCATTCCTCACGAAGAAATGAAAAGTAACTTAGC
TCACCCATTAAATAAAGGTAATATTCGTACTGGTGAAACAACGCCCTACTCTAATATTGCATTAGAATCGAATGTTACTT
TTTAA

Upstream 100 bases:

>100_bases
ATAAAACGTCAAAAGAAATGGTTATTACAATCATCGGCTTAGTACTCATTTTAGTAGCCGCTTCTGTTACAGTATTTATA
AAATAAGGAGTGTAGATGTC

Downstream 100 bases:

>100_bases
AAGTTATAACTTGAAAGGAGCGTACACATGACCAACAAAGTTGTTATTTTAGGTTCAACGAATGTCGATCAATTTTTAAC
AGTTGAAAGATATGCACAAC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKKSAILNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQ
LQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF

Sequences:

>Translated_134_residues
MKKSAILNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQ
LQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
>Mature_134_residues
MKKSAILNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQ
LQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=141, Percent_Identity=42.5531914893617, Blast_Score=119, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 15180; Mature: 15180

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSAILNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLE
CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
EMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGET
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCCCCCCCC
TPYSNIALESNVTF
CCCCCEEECCCCCC
>Mature Secondary Structure
MKKSAILNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLE
CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
EMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGET
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCCCCCCCC
TPYSNIALESNVTF
CCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA