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The map label for this gene is rpe [H]

Identifier: 160903337

GI number: 160903337

Start: 2113540

End: 2114199

Strand: Direct

Name: rpe [H]

Synonym: Pmob_1908

Alternate gene names: 160903337

Gene position: 2113540-2114199 (Clockwise)

Preceding gene: 160903336

Following gene: 160903338

Centisome position: 97.42

GC content: 32.88

Gene sequence:

>660_bases
TTGATAAAAATATATCCTTCCATTTTAGCTGCTGATTTTTTGAATTTAGCTCAAGAGGTAGAGAAAGTTTCTAAAGATGC
TGATGGAATACATCTCGATATTATGGATGGAGTGTTTGTTCCAAACATTACTTTTGGTTTTCCAATAGTAGAATCGATTA
GAAAAAAATTTAAAGATATATATTTGGATGCTCATTTGATGATAGTTGAACCAGATAAATATTTAGAAAACTTTTCTAAG
TCTGTGAATAGCATAACAGTGCATTATGAAGCGGTCACACATCTACACAGAACTGTATTAAAAATCAAAGAGTTGGGGTG
TGAAGCAGGTGTTACTTTAAATCCACATACTCCAGTATCACTTTTAGAAGAAATTCTACCATATGTGGACAAGGTATTGA
TTATGTCGGTTAATCCAGGATTTACTGGACAACATTTTATAGAAACTACTTATGAAAAAGTGAGAAAATTAAGAAGACTC
TCTGATGAGAAAGGACTGAATGTTGAAATAATGGTTGATGGAGGAGTGAATAAACAGAACATCGGATTACTTCACCAAAG
TGGCGTTAACACTTTTATCATTGGTGCCAGTGTGTTTTATTCAGAAAATCCTTCACAAGAGATAATCGAACTAAAAAAGG
TGGCAGAAGATTTTGAGTGA

Upstream 100 bases:

>100_bases
AGAGAACGGACAGATTTCATTGAGTAGGTATACCAATTATTGTCAAATATACGAAGAAATAGAAGATAGTTCACTAAAAT
TACAATAGGGGTGTTTCAGT

Downstream 100 bases:

>100_bases
CGTCTATTTGGCTACATCAAACAGAAACAAGGTAAGAGAAATCAATGAAATCTTGCAAAATATTGATATAAATGGAAGTA
TCAATGTTAAATATATATTT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MIKIYPSILAADFLNLAQEVEKVSKDADGIHLDIMDGVFVPNITFGFPIVESIRKKFKDIYLDAHLMIVEPDKYLENFSK
SVNSITVHYEAVTHLHRTVLKIKELGCEAGVTLNPHTPVSLLEEILPYVDKVLIMSVNPGFTGQHFIETTYEKVRKLRRL
SDEKGLNVEIMVDGGVNKQNIGLLHQSGVNTFIIGASVFYSENPSQEIIELKKVAEDFE

Sequences:

>Translated_219_residues
MIKIYPSILAADFLNLAQEVEKVSKDADGIHLDIMDGVFVPNITFGFPIVESIRKKFKDIYLDAHLMIVEPDKYLENFSK
SVNSITVHYEAVTHLHRTVLKIKELGCEAGVTLNPHTPVSLLEEILPYVDKVLIMSVNPGFTGQHFIETTYEKVRKLRRL
SDEKGLNVEIMVDGGVNKQNIGLLHQSGVNTFIIGASVFYSENPSQEIIELKKVAEDFE
>Mature_219_residues
MIKIYPSILAADFLNLAQEVEKVSKDADGIHLDIMDGVFVPNITFGFPIVESIRKKFKDIYLDAHLMIVEPDKYLENFSK
SVNSITVHYEAVTHLHRTVLKIKELGCEAGVTLNPHTPVSLLEEILPYVDKVLIMSVNPGFTGQHFIETTYEKVRKLRRL
SDEKGLNVEIMVDGGVNKQNIGLLHQSGVNTFIIGASVFYSENPSQEIIELKKVAEDFE

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=219, Percent_Identity=36.5296803652968, Blast_Score=144, Evalue=4e-35,
Organism=Homo sapiens, GI219879828, Length=219, Percent_Identity=35.1598173515982, Blast_Score=137, Evalue=7e-33,
Organism=Homo sapiens, GI24307923, Length=172, Percent_Identity=27.3255813953488, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1789788, Length=211, Percent_Identity=40.7582938388626, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1790523, Length=215, Percent_Identity=34.4186046511628, Blast_Score=134, Evalue=3e-33,
Organism=Escherichia coli, GI1790754, Length=202, Percent_Identity=28.2178217821782, Blast_Score=95, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17552948, Length=219, Percent_Identity=38.3561643835616, Blast_Score=152, Evalue=9e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=39.2857142857143, Blast_Score=154, Evalue=1e-38,
Organism=Drosophila melanogaster, GI24586301, Length=218, Percent_Identity=40.3669724770642, Blast_Score=160, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24658; Mature: 24658

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIYPSILAADFLNLAQEVEKVSKDADGIHLDIMDGVFVPNITFGFPIVESIRKKFKDI
CEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHH
YLDAHLMIVEPDKYLENFSKSVNSITVHYEAVTHLHRTVLKIKELGCEAGVTLNPHTPVS
HHCEEEEEECCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHH
LLEEILPYVDKVLIMSVNPGFTGQHFIETTYEKVRKLRRLSDEKGLNVEIMVDGGVNKQN
HHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
IGLLHQSGVNTFIIGASVFYSENPSQEIIELKKVAEDFE
CCEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKIYPSILAADFLNLAQEVEKVSKDADGIHLDIMDGVFVPNITFGFPIVESIRKKFKDI
CEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHH
YLDAHLMIVEPDKYLENFSKSVNSITVHYEAVTHLHRTVLKIKELGCEAGVTLNPHTPVS
HHCEEEEEECCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHH
LLEEILPYVDKVLIMSVNPGFTGQHFIETTYEKVRKLRRLSDEKGLNVEIMVDGGVNKQN
HHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
IGLLHQSGVNTFIIGASVFYSENPSQEIIELKKVAEDFE
CCEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]