Click here to switch to the map view.

The map label for this gene is dacB [H]

Identifier: 160903197

GI number: 160903197

Start: 1930974

End: 1932335

Strand: Direct

Name: dacB [H]

Synonym: Pmob_1765

Alternate gene names: 160903197

Gene position: 1930974-1932335 (Clockwise)

Preceding gene: 160903196

Following gene: 160903198

Centisome position: 89.0

GC content: 31.72

Gene sequence:

>1362_bases
GTGAATAATATTAAATCCAAAAATCAGTTAAGATCCAGTAATTTTTTGACCGTCTTGAGTCTCACAATCTTTATTTTAGT
TTTTTTTAATGTTAGTACAGTTGTCATAGCTGCTCCAATTTCGAGTAGGGTTCCAATTGCTAGAGATAACGAAGATTCCT
CAAAAATACAAATAATAGAACCGTCTAAAATTGCTGAACCTGTGCCCAAATCTGTTCCCACAATCCCACCTTCGAAAACA
ATAACTAATCAAATACAAAATGAATTAATTTCAAAATTTGAAAGTTTTCAAGGATTTGTTGGGTTTGAATTGAGAGATCT
TGGCACCAATGAAGTTCTTTTCAACTACAATTCAGATAAATTATTCATCCCTGCCTCAAACACAAAATTAATTACCGCCC
TCGTTGCCTTGGAAAGTCTGGGGGATAATTACAAATTCGAAACTAAAATATACCATACAGGGGAAATATCACCTAATTTC
AGAGGAAATCTGTATATAAAAGGATTTGGAGACCCTGTTTTAACTTCCTTACAATATAAAGAAATACTAAAAAGGGCAAC
GGTGGATAGAGGAATAAAAAGGATATATGGTGATATAATTTTCGATTATTCTTTCATGACCGAAGAAGGTTTTGGTAGAG
GCTGGATGTGGGATGACCCCCAGCCACAAATCGCTGCAATTAATATTTGGCAAACAAGCTATGAATCTTTTAAATATAAA
ACAAATCATGAAATAAAAGATTATATAAACTTCCTTACAACATTATTCTTGCAAGAAATAGGTGTTGAATTTTGGGGAGA
AATAAGATATGATGAAGTGCCTTTTAACGCTAATCTTCTATATACAAATCATTCTCCACCACTAATCAATATAATACAAC
AAATGTTGGAAACAAGCGATAACCAGATAGCCGAACAGATTTTTAGAAATCTTGGCGCTATTTATGGCAATGGGAAAATA
GAAGATTCTGAAAATCACTTCCAAAAAGTAATCAAAGAAACCTTAGGATACGACCCAACCGATTATGTAATTAAAGATGG
TTGTGGATTATCAATGTACAACTTGTTACCCCCAAAGATGATATCTGATACATTATTTTATCTATATTCAAAGTATCAAT
CTAAATTTTTTGATTACTTAGCATCACCATACGAAAAAAGCACTCTTGAAAATCGTTTTAACTTTGAAATTTACGCAAAA
ACTGGAACTTTATATTACGATTCTGCCATCAGTGGGATTTTCAAATCAAAAAGTGGAAAATATTATATTTTTAGCTTAAT
GGAAAACAACTTTTCCTTTGATGTTTTGAAGGTGAAAGAGTTTGAAAATTCCATAATCAACTATCTCTATGAAAACTTAT
AA

Upstream 100 bases:

>100_bases
TGGGTATGATGCTCAAAGATCATGATTTCAAAGAAGTCATAGGTAATTATACAAAGTTAATCGAAACCGCCTTAGCTTAT
AAAATAAATTCTGAAAAGGA

Downstream 100 bases:

>100_bases
TAACAAAAGGGGGATTAATTTATGAGTGAAGAGTTCAACGGTTACTACAGATTTCCGACCATTTACAACGATCAAATAGC
CTTTGTTGCAGAAGATGACA

Product: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; Penicillin-binding protein 4; PBP-4 [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MNNIKSKNQLRSSNFLTVLSLTIFILVFFNVSTVVIAAPISSRVPIARDNEDSSKIQIIEPSKIAEPVPKSVPTIPPSKT
ITNQIQNELISKFESFQGFVGFELRDLGTNEVLFNYNSDKLFIPASNTKLITALVALESLGDNYKFETKIYHTGEISPNF
RGNLYIKGFGDPVLTSLQYKEILKRATVDRGIKRIYGDIIFDYSFMTEEGFGRGWMWDDPQPQIAAINIWQTSYESFKYK
TNHEIKDYINFLTTLFLQEIGVEFWGEIRYDEVPFNANLLYTNHSPPLINIIQQMLETSDNQIAEQIFRNLGAIYGNGKI
EDSENHFQKVIKETLGYDPTDYVIKDGCGLSMYNLLPPKMISDTLFYLYSKYQSKFFDYLASPYEKSTLENRFNFEIYAK
TGTLYYDSAISGIFKSKSGKYYIFSLMENNFSFDVLKVKEFENSIINYLYENL

Sequences:

>Translated_453_residues
MNNIKSKNQLRSSNFLTVLSLTIFILVFFNVSTVVIAAPISSRVPIARDNEDSSKIQIIEPSKIAEPVPKSVPTIPPSKT
ITNQIQNELISKFESFQGFVGFELRDLGTNEVLFNYNSDKLFIPASNTKLITALVALESLGDNYKFETKIYHTGEISPNF
RGNLYIKGFGDPVLTSLQYKEILKRATVDRGIKRIYGDIIFDYSFMTEEGFGRGWMWDDPQPQIAAINIWQTSYESFKYK
TNHEIKDYINFLTTLFLQEIGVEFWGEIRYDEVPFNANLLYTNHSPPLINIIQQMLETSDNQIAEQIFRNLGAIYGNGKI
EDSENHFQKVIKETLGYDPTDYVIKDGCGLSMYNLLPPKMISDTLFYLYSKYQSKFFDYLASPYEKSTLENRFNFEIYAK
TGTLYYDSAISGIFKSKSGKYYIFSLMENNFSFDVLKVKEFENSIINYLYENL
>Mature_453_residues
MNNIKSKNQLRSSNFLTVLSLTIFILVFFNVSTVVIAAPISSRVPIARDNEDSSKIQIIEPSKIAEPVPKSVPTIPPSKT
ITNQIQNELISKFESFQGFVGFELRDLGTNEVLFNYNSDKLFIPASNTKLITALVALESLGDNYKFETKIYHTGEISPNF
RGNLYIKGFGDPVLTSLQYKEILKRATVDRGIKRIYGDIIFDYSFMTEEGFGRGWMWDDPQPQIAAINIWQTSYESFKYK
TNHEIKDYINFLTTLFLQEIGVEFWGEIRYDEVPFNANLLYTNHSPPLINIIQQMLETSDNQIAEQIFRNLGAIYGNGKI
EDSENHFQKVIKETLGYDPTDYVIKDGCGLSMYNLLPPKMISDTLFYLYSKYQSKFFDYLASPYEKSTLENRFNFEIYAK
TGTLYYDSAISGIFKSKSGKYYIFSLMENNFSFDVLKVKEFENSIINYLYENL

Specific function: Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction [H]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S13 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR000667 [H]

Pfam domain/function: PF02113 Peptidase_S13 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 52201; Mature: 52201

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNIKSKNQLRSSNFLTVLSLTIFILVFFNVSTVVIAAPISSRVPIARDNEDSSKIQIIE
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEEC
PSKIAEPVPKSVPTIPPSKTITNQIQNELISKFESFQGFVGFELRDLGTNEVLFNYNSDK
CHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCE
LFIPASNTKLITALVALESLGDNYKFETKIYHTGEISPNFRGNLYIKGFGDPVLTSLQYK
EEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHH
EILKRATVDRGIKRIYGDIIFDYSFMTEEGFGRGWMWDDPQPQIAAINIWQTSYESFKYK
HHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEECCHHHCEEC
TNHEIKDYINFLTTLFLQEIGVEFWGEIRYDEVPFNANLLYTNHSPPLINIIQQMLETSD
CCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCC
NQIAEQIFRNLGAIYGNGKIEDSENHFQKVIKETLGYDPTDYVIKDGCGLSMYNLLPPKM
HHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHCCCHHH
ISDTLFYLYSKYQSKFFDYLASPYEKSTLENRFNFEIYAKTGTLYYDSAISGIFKSKSGK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEECCCEEEHHHHHHHHHCCCCC
YYIFSLMENNFSFDVLKVKEFENSIINYLYENL
EEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNIKSKNQLRSSNFLTVLSLTIFILVFFNVSTVVIAAPISSRVPIARDNEDSSKIQIIE
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEEC
PSKIAEPVPKSVPTIPPSKTITNQIQNELISKFESFQGFVGFELRDLGTNEVLFNYNSDK
CHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCE
LFIPASNTKLITALVALESLGDNYKFETKIYHTGEISPNFRGNLYIKGFGDPVLTSLQYK
EEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHH
EILKRATVDRGIKRIYGDIIFDYSFMTEEGFGRGWMWDDPQPQIAAINIWQTSYESFKYK
HHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEECCHHHCEEC
TNHEIKDYINFLTTLFLQEIGVEFWGEIRYDEVPFNANLLYTNHSPPLINIIQQMLETSD
CCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCC
NQIAEQIFRNLGAIYGNGKIEDSENHFQKVIKETLGYDPTDYVIKDGCGLSMYNLLPPKM
HHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHCCCHHH
ISDTLFYLYSKYQSKFFDYLASPYEKSTLENRFNFEIYAKTGTLYYDSAISGIFKSKSGK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEECCCEEEHHHHHHHHHCCCCC
YYIFSLMENNFSFDVLKVKEFENSIINYLYENL
EEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]