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The map label for this gene is xerC [H]

Identifier: 160903194

GI number: 160903194

Start: 1928535

End: 1929455

Strand: Direct

Name: xerC [H]

Synonym: Pmob_1762

Alternate gene names: 160903194

Gene position: 1928535-1929455 (Clockwise)

Preceding gene: 160903193

Following gene: 160903195

Centisome position: 88.89

GC content: 31.27

Gene sequence:

>921_bases
ATGATGGATATAGATAATACATCAGACTCTATAAAAGATAAAGACAAAATCGAAGGATATATCTCAGAATTTTTATCATA
TCTGAAATTCGTCAAGCGAAGGGCAGATTCTACTATATATGAATACAAAAAAATATTGAAGAGTTATAAAAAATTTGTTC
AAATTTATGGTCTTACCCGAGGATGCTTTCTTAAATATCTTGAAGAGATCTCAAATCTATCACAAAGAACCATAAAACTT
AGGATAGTTGTTTTAAAATCCTTTTTGAACTATCTATACGAAAATGGAGAAATATCTGGTAAAAAATATTGGAAAGATGC
AAACGCAAAAATTCCAAGTGACGTTCCCAAAGGCTTGACAGAAAGTCAAATCAAAGTTTTTTTCTCGGTTATTGAAGACA
AATTTGACAAAACTTTTTATTCATTGTTATTAAAAACAGGTTTAAGAATTTCAGAGGCTTTGTGGTTAGAAAAAGAGCAA
ATTATTTTTTACAACGATCATGCTGAGCTTGTTATAAATGGGAAAGGAAACAGAGTAAGATATCTAAAGATTTCAAAACA
ATACGCAGAACAGTTAATAACCTTTGCAGAAAAAAACACCCCAAAGGGGGCTCAAGGTAAGAAGTATATCTTTTCAAATG
ACAACGATGTCCCCATAACTTCTAGAACTATGGAGAGAAGATTCAAAGATTACGTTATTAAAGCCAACAATAAAATTGAT
CAATTAAGAACAAAGGGCTATAACAATATAAATTATATTAACGCAACTCCTCATGCTTTAAGACACACATGTGCAAAAAG
GCTTTTGAACTCGGGAAAAAATTTGGAGGAAGTTCGATATATACTTGGACATACAACCATCTCAACTACTGGGATATACG
TAAGATCTGATAGCCATAGTTCAGTGCTGGATCAAATATAA

Upstream 100 bases:

>100_bases
AAGAAAAATCAAAAGCAAAACTCGATCTGATTAGAAATACCGTTGATAGCATCATAGAACATGTTGTTTAGCGTTTCACA
CCTTATTGGGGGAAAAAACT

Downstream 100 bases:

>100_bases
CAATTTCAAAGTTACCTCTCAAAAAGTTCCCCAACTTAACGGGGAACTTTTTAATAAAGAAAAAAATATTTTTATTGTTT
ATTATATGTTTAACTTTACA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MMDIDNTSDSIKDKDKIEGYISEFLSYLKFVKRRADSTIYEYKKILKSYKKFVQIYGLTRGCFLKYLEEISNLSQRTIKL
RIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLTESQIKVFFSVIEDKFDKTFYSLLLKTGLRISEALWLEKEQ
IIFYNDHAELVINGKGNRVRYLKISKQYAEQLITFAEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNKID
QLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDSHSSVLDQI

Sequences:

>Translated_306_residues
MMDIDNTSDSIKDKDKIEGYISEFLSYLKFVKRRADSTIYEYKKILKSYKKFVQIYGLTRGCFLKYLEEISNLSQRTIKL
RIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLTESQIKVFFSVIEDKFDKTFYSLLLKTGLRISEALWLEKEQ
IIFYNDHAELVINGKGNRVRYLKISKQYAEQLITFAEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNKID
QLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDSHSSVLDQI
>Mature_306_residues
MMDIDNTSDSIKDKDKIEGYISEFLSYLKFVKRRADSTIYEYKKILKSYKKFVQIYGLTRGCFLKYLEEISNLSQRTIKL
RIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLTESQIKVFFSVIEDKFDKTFYSLLLKTGLRISEALWLEKEQ
IIFYNDHAELVINGKGNRVRYLKISKQYAEQLITFAEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNKID
QLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDSHSSVLDQI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=287, Percent_Identity=27.1777003484321, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790244, Length=289, Percent_Identity=23.8754325259516, Blast_Score=85, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35623; Mature: 35623

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDIDNTSDSIKDKDKIEGYISEFLSYLKFVKRRADSTIYEYKKILKSYKKFVQIYGLTR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHH
GCFLKYLEEISNLSQRTIKLRIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHCCCCH
ESQIKVFFSVIEDKFDKTFYSLLLKTGLRISEALWLEKEQIIFYNDHAELVINGKGNRVR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCEEE
YLKISKQYAEQLITFAEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNKID
EEEECHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHH
QLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDSHS
HHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECEEEEECCCCH
SVLDQI
HHHHCC
>Mature Secondary Structure
MMDIDNTSDSIKDKDKIEGYISEFLSYLKFVKRRADSTIYEYKKILKSYKKFVQIYGLTR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHH
GCFLKYLEEISNLSQRTIKLRIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHCCCCH
ESQIKVFFSVIEDKFDKTFYSLLLKTGLRISEALWLEKEQIIFYNDHAELVINGKGNRVR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCEEE
YLKISKQYAEQLITFAEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNKID
EEEECHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHH
QLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDSHS
HHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECEEEEECCCCH
SVLDQI
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA