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The map label for this gene is sdhB [H]

Identifier: 160903192

GI number: 160903192

Start: 1925975

End: 1926664

Strand: Direct

Name: sdhB [H]

Synonym: Pmob_1760

Alternate gene names: 160903192

Gene position: 1925975-1926664 (Clockwise)

Preceding gene: 160903191

Following gene: 160903193

Centisome position: 88.77

GC content: 34.49

Gene sequence:

>690_bases
ATGAAAAACTTCGGTATTTTCGACGTAATCGGTCCCGTTATGATTGGTCCTTCTAGTTCTCATACTGCTGGTGCTGCTAG
AATTGCTTTAGTAGCTCGAAGGATTGCCGGGGTAGGCTATCATCATGTGGATTTTTTTCTTCATGGTTCTTTCGCAGCTA
CTTACAAAGGCCATGGAACCGATAAGGCTCTTGTTGGAGGAATATTAGGGTTTGAGCCTAGTGATCTACGCATTAAGAAT
TCTTTTTTACATGCCAAAGAGGTAGGAATTACTTATAATTTTATTCCTGTTAACTTGGAAGACGTCCATCCTAATACTGT
AAAAATTGAGTTTCATTACCCCGATGGAAGTTATTTTTATGTAATCGGTTCTTCTATCGGTGGGGGAAATATTGAAATCA
CTAATATTAATGGTACCTCTGTTATTTTTACAGCAGAAAATCCTACTTTACTTTTTAGATACAAAGAGCAAAAAGGAATG
ATTGCTTATATTTCCAATGCTTTGTACTCCAAAGGGCATAATATTGATTTAATGAGAACCATCAAAGAAGACGATGAGGT
TCTTCTTATAGTAGAATTAAATGAAAGTTTAGATTCTGAACTCTATGAATCTATCCAAAACGGAAAGACTTTTTTATTTA
GCAAATATATTTATGTACCCATTTCAAAAATAGGTAAAAGCAATGATTAA

Upstream 100 bases:

>100_bases
CTCCAACAGGTTGTGCTATAAAAAACTCTCTGCTTAAGAATGGTTAAACTTTGTTACTTTCATTGCAATAATATCAGAGA
GATAAAGAAAGGGATATCAT

Downstream 100 bases:

>100_bases
ATAAAAGTTAAATGTCTTACTATTGAAAGTTTTAGAAAATAGTCAAATGCTTGCTTTTACAGTTTCCAAAAATAGTAAAA
AACCCAAAACTAAGGAGGAA

Product: L-serine dehydratase, iron-sulfur-dependent subunit beta

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKNFGIFDVIGPVMIGPSSSHTAGAARIALVARRIAGVGYHHVDFFLHGSFAATYKGHGTDKALVGGILGFEPSDLRIKN
SFLHAKEVGITYNFIPVNLEDVHPNTVKIEFHYPDGSYFYVIGSSIGGGNIEITNINGTSVIFTAENPTLLFRYKEQKGM
IAYISNALYSKGHNIDLMRTIKEDDEVLLIVELNESLDSELYESIQNGKTFLFSKYIYVPISKIGKSND

Sequences:

>Translated_229_residues
MKNFGIFDVIGPVMIGPSSSHTAGAARIALVARRIAGVGYHHVDFFLHGSFAATYKGHGTDKALVGGILGFEPSDLRIKN
SFLHAKEVGITYNFIPVNLEDVHPNTVKIEFHYPDGSYFYVIGSSIGGGNIEITNINGTSVIFTAENPTLLFRYKEQKGM
IAYISNALYSKGHNIDLMRTIKEDDEVLLIVELNESLDSELYESIQNGKTFLFSKYIYVPISKIGKSND
>Mature_229_residues
MKNFGIFDVIGPVMIGPSSSHTAGAARIALVARRIAGVGYHHVDFFLHGSFAATYKGHGTDKALVGGILGFEPSDLRIKN
SFLHAKEVGITYNFIPVNLEDVHPNTVKIEFHYPDGSYFYVIGSSIGGGNIEITNINGTSVIFTAENPTLLFRYKEQKGM
IAYISNALYSKGHNIDLMRTIKEDDEVLLIVELNESLDSELYESIQNGKTFLFSKYIYVPISKIGKSND

Specific function: Unknown

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 25258; Mature: 25258

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFGIFDVIGPVMIGPSSSHTAGAARIALVARRIAGVGYHHVDFFLHGSFAATYKGHGT
CCCCCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEECCCC
DKALVGGILGFEPSDLRIKNSFLHAKEVGITYNFIPVNLEDVHPNTVKIEFHYPDGSYFY
CHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEEEEECCCCCEEEEEEECCCCCEEE
VIGSSIGGGNIEITNINGTSVIFTAENPTLLFRYKEQKGMIAYISNALYSKGHNIDLMRT
EEECCCCCCEEEEEEECCCEEEEEECCCEEEEEEECCCCEEEEEEHHHHCCCCCEEEEEE
IKEDDEVLLIVELNESLDSELYESIQNGKTFLFSKYIYVPISKIGKSND
ECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEEEHHHCCCCCC
>Mature Secondary Structure
MKNFGIFDVIGPVMIGPSSSHTAGAARIALVARRIAGVGYHHVDFFLHGSFAATYKGHGT
CCCCCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEECCCC
DKALVGGILGFEPSDLRIKNSFLHAKEVGITYNFIPVNLEDVHPNTVKIEFHYPDGSYFY
CHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEEEEECCCCCEEEEEEECCCCCEEE
VIGSSIGGGNIEITNINGTSVIFTAENPTLLFRYKEQKGMIAYISNALYSKGHNIDLMRT
EEECCCCCCEEEEEEECCCEEEEEECCCEEEEEEECCCCEEEEEEHHHHCCCCCEEEEEE
IKEDDEVLLIVELNESLDSELYESIQNGKTFLFSKYIYVPISKIGKSND
ECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEEEHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9244285; 2065681 [H]