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The map label for this gene is glgX [H]

Identifier: 160903185

GI number: 160903185

Start: 1916085

End: 1918241

Strand: Direct

Name: glgX [H]

Synonym: Pmob_1750

Alternate gene names: 160903185

Gene position: 1916085-1918241 (Clockwise)

Preceding gene: 160903184

Following gene: 160903186

Centisome position: 88.32

GC content: 33.98

Gene sequence:

>2157_bases
ATGGAAGAAACGAAAATAAAGGAAAAAGCACAATTTAAAGTAAGCAAGGGATTTCCAGTCTTAGGTACGTCTATAGATAG
AGGAGGAGTTAATTTTGGTGTTTTCACGAGAAACGGAACATCAGTTACTTTAGAGATATATGAAAATTACTATGATGAAG
AACCAGCTTTTAAATATGTTCTCGATAAAAAAGAAAATAGAACAGGCAATATTTGGCACGTTTTTGTTGAACAAGCAAGA
GCAGGTATGTCCTATGGTTGGCGTATTGATGGACCTTACAATCCAGAGGAAGGGTTTAGATTCAACAAAAACAAATTACT
CTTAGATCCGTATGCTAAAGTAATTGGAGGAAGTTTAGATTTTTCGGAAGAATCCATTTTCGGTTATGACAAAAATGATC
CTAAAAAAGACCTAAGTTTTTCTACTTTGGATTCTGCAAAGTCTCAAGTGAAATCTTTTATTTGGGATAGCCGTGGCTAT
AACTGGAAAAATGATGAAAATCCACGTCATCCACTAAACGATATGATTATTTATGAACTTCATGTCAGACTTTACACAAT
AAATCCAAATTCTAACGTAGAACATCGAGGAACTTATAAGGGAATCGCTGAAAAAATAAATTATTTAAAAGGTTTAGGAG
TAAACGCCGTTGAACTGATGCCCATCTTTGCTTTTCCTTTGAACGATAATCCCAAAGTGAATACTATAACTGGTGAAAAA
TTAAAAAATGTATGGGGTTATAATCCGGTAAACTTTTTTTCTGTAACGAGTAATTACAGATATGGTGTAAAAATTGGGGA
GGAAATAATCCAGTTCCAGGATTTAGTTTTTGAATTACACAAAAATGGAATAGAAGTGATATTAGATGTTGTCTTTAATC
ACACAGCAGAAGGAAACGAATTGGGACCAACTCTCAATTTTAGAGGATTAGAAAACTCTGTTTATTATCTATTAAAAAAA
GATAACCCAAGATATTATGAAAATTTTTCAGGAACTGGAAACACTATTAATTCTAGTCATTATGTTGTAAAACAAATGAT
TTTGGATAGTTTGAGGTATTGGGTTTCCGAGATGCATGTAGATGGTTTTAGATTCGATCTAGCTTCTATTTTAGGAAGAG
ATTCAAAAGGAAATTGGATTGGCGATCTGTCTCTATTAAAAGACATTGCTGATGACCCTATTTTGGCTGGAACCAAACTC
ATAGCAGAAGGTTGGGATGCCGCTGGAGGATACTACGTTGGTGATTTTCCCACTGGATGGGCAGAATGGAATGGAAAGTT
CAGAGACACAGTGAGAAGATTTGTTAAAGGCGATAATGGTGTAGTTTCAGATTTAGCAACAAGAATAGCTGGAAGCCCAG
ATCTTTTTGAAAAAAGAGGCAGAAAGCCTTACAATAGCGTTAATTTTATTACTTCTCACGATGGATTTACTATGTGGGAT
TTAGTTTCTTACAACAACAAGCACAATGATGCTAACGGGGAAAATAACCGTGATGGAACTGACGCCAATTATAGTTTCAA
TTACGGGGTTGAAGGAGAGACTAACGACGAAAATATAATAAAACTCAGAAAACAACAAATTAAAAATTTCATAACTATAT
TAATGGTATCACAAGGGTTACCTATGATTTTAATGGGTGACGAATTCTGTAGAACTCAATTTGGTAACAACAACGCTTAC
TGCCAAGATAATTACATTTCATGGGTGGATTGGAGCAGAAAAGTAAAATTCAACGACATTTTTAATTTTACAAAAAATAT
GATCCATTTTAGAAAAGTTCATTGTGCACTTAGAAGAGACAGATTTTTTACGGGAAGAGATCTAAGTGGTGATGGCATAG
CAGACATAACTTGGCATGGAGTCAAACCATTCAAACCTGATTTTGGATATTATTCTCACAGTCTAGCGTTCATGATAAGT
GGCGATGACTATATTCAAGGATGTAAAGAAAAAGACAGTGATATATACGTAGCCTTAAATGCTTTCATAAAGGATTTACA
ATTTGAAATTCCAAAATTACAAAATGGGAAAAAATGGTATAGGGTAGTAGATACATCTGAAGAATCACCCAACGATTTCC
TCTTAGAACCTTCTATAGTCAAAGATAATCACTACACCGTACATTCAAGAAGCTCAATAGTTTTAATTTCAAAATAA

Upstream 100 bases:

>100_bases
TCTACGACGTACCGGTTTCGATGAACAAGGTGAAAGACGTAAGCATAATATACATAAACTAATAAAATATTAAAAGTTTA
TATCTTTAGAAGGTGAAATT

Downstream 100 bases:

>100_bases
TTAGATACTTGATTGCCGTCGATAGCACGAGGATCAAGGTGACCAACCGGAACTTAAGAGCTGGAGGACGACGGTGAACC
TTTCGAGGAGAAGATAGAAC

Product: glycogen debranching protein GlgX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MEETKIKEKAQFKVSKGFPVLGTSIDRGGVNFGVFTRNGTSVTLEIYENYYDEEPAFKYVLDKKENRTGNIWHVFVEQAR
AGMSYGWRIDGPYNPEEGFRFNKNKLLLDPYAKVIGGSLDFSEESIFGYDKNDPKKDLSFSTLDSAKSQVKSFIWDSRGY
NWKNDENPRHPLNDMIIYELHVRLYTINPNSNVEHRGTYKGIAEKINYLKGLGVNAVELMPIFAFPLNDNPKVNTITGEK
LKNVWGYNPVNFFSVTSNYRYGVKIGEEIIQFQDLVFELHKNGIEVILDVVFNHTAEGNELGPTLNFRGLENSVYYLLKK
DNPRYYENFSGTGNTINSSHYVVKQMILDSLRYWVSEMHVDGFRFDLASILGRDSKGNWIGDLSLLKDIADDPILAGTKL
IAEGWDAAGGYYVGDFPTGWAEWNGKFRDTVRRFVKGDNGVVSDLATRIAGSPDLFEKRGRKPYNSVNFITSHDGFTMWD
LVSYNNKHNDANGENNRDGTDANYSFNYGVEGETNDENIIKLRKQQIKNFITILMVSQGLPMILMGDEFCRTQFGNNNAY
CQDNYISWVDWSRKVKFNDIFNFTKNMIHFRKVHCALRRDRFFTGRDLSGDGIADITWHGVKPFKPDFGYYSHSLAFMIS
GDDYIQGCKEKDSDIYVALNAFIKDLQFEIPKLQNGKKWYRVVDTSEESPNDFLLEPSIVKDNHYTVHSRSSIVLISK

Sequences:

>Translated_718_residues
MEETKIKEKAQFKVSKGFPVLGTSIDRGGVNFGVFTRNGTSVTLEIYENYYDEEPAFKYVLDKKENRTGNIWHVFVEQAR
AGMSYGWRIDGPYNPEEGFRFNKNKLLLDPYAKVIGGSLDFSEESIFGYDKNDPKKDLSFSTLDSAKSQVKSFIWDSRGY
NWKNDENPRHPLNDMIIYELHVRLYTINPNSNVEHRGTYKGIAEKINYLKGLGVNAVELMPIFAFPLNDNPKVNTITGEK
LKNVWGYNPVNFFSVTSNYRYGVKIGEEIIQFQDLVFELHKNGIEVILDVVFNHTAEGNELGPTLNFRGLENSVYYLLKK
DNPRYYENFSGTGNTINSSHYVVKQMILDSLRYWVSEMHVDGFRFDLASILGRDSKGNWIGDLSLLKDIADDPILAGTKL
IAEGWDAAGGYYVGDFPTGWAEWNGKFRDTVRRFVKGDNGVVSDLATRIAGSPDLFEKRGRKPYNSVNFITSHDGFTMWD
LVSYNNKHNDANGENNRDGTDANYSFNYGVEGETNDENIIKLRKQQIKNFITILMVSQGLPMILMGDEFCRTQFGNNNAY
CQDNYISWVDWSRKVKFNDIFNFTKNMIHFRKVHCALRRDRFFTGRDLSGDGIADITWHGVKPFKPDFGYYSHSLAFMIS
GDDYIQGCKEKDSDIYVALNAFIKDLQFEIPKLQNGKKWYRVVDTSEESPNDFLLEPSIVKDNHYTVHSRSSIVLISK
>Mature_718_residues
MEETKIKEKAQFKVSKGFPVLGTSIDRGGVNFGVFTRNGTSVTLEIYENYYDEEPAFKYVLDKKENRTGNIWHVFVEQAR
AGMSYGWRIDGPYNPEEGFRFNKNKLLLDPYAKVIGGSLDFSEESIFGYDKNDPKKDLSFSTLDSAKSQVKSFIWDSRGY
NWKNDENPRHPLNDMIIYELHVRLYTINPNSNVEHRGTYKGIAEKINYLKGLGVNAVELMPIFAFPLNDNPKVNTITGEK
LKNVWGYNPVNFFSVTSNYRYGVKIGEEIIQFQDLVFELHKNGIEVILDVVFNHTAEGNELGPTLNFRGLENSVYYLLKK
DNPRYYENFSGTGNTINSSHYVVKQMILDSLRYWVSEMHVDGFRFDLASILGRDSKGNWIGDLSLLKDIADDPILAGTKL
IAEGWDAAGGYYVGDFPTGWAEWNGKFRDTVRRFVKGDNGVVSDLATRIAGSPDLFEKRGRKPYNSVNFITSHDGFTMWD
LVSYNNKHNDANGENNRDGTDANYSFNYGVEGETNDENIIKLRKQQIKNFITILMVSQGLPMILMGDEFCRTQFGNNNAY
CQDNYISWVDWSRKVKFNDIFNFTKNMIHFRKVHCALRRDRFFTGRDLSGDGIADITWHGVKPFKPDFGYYSHSLAFMIS
GDDYIQGCKEKDSDIYVALNAFIKDLQFEIPKLQNGKKWYRVVDTSEESPNDFLLEPSIVKDNHYTVHSRSSIVLISK

Specific function: Hydrolyzes The Alpha-1,6-Glucosidic Linkages In Glycogen Which Has First Been Partially Depolymerized By Phosphorylase. Shows Only Very Little Activity With Native Glycogen. [C]

COG id: COG1523

COG function: function code G; Type II secretory pathway, pullulanase PulA and related glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Escherichia coli, GI2367229, Length=670, Percent_Identity=39.5522388059701, Blast_Score=446, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR011837
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02922 CBM_48 [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 82359; Mature: 82359

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEETKIKEKAQFKVSKGFPVLGTSIDRGGVNFGVFTRNGTSVTLEIYENYYDEEPAFKYV
CCCCCCCHHHHEEECCCCCEEECCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCHHE
LDKKENRTGNIWHVFVEQARAGMSYGWRIDGPYNPEEGFRFNKNKLLLDPYAKVIGGSLD
ECCCCCCCCCEEEEEEHHHHCCCCCCEEECCCCCCCCCCEECCCEEEECCHHHHHCCCCC
FSEESIFGYDKNDPKKDLSFSTLDSAKSQVKSFIWDSRGYNWKNDENPRHPLNDMIIYEL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE
HVRLYTINPNSNVEHRGTYKGIAEKINYLKGLGVNAVELMPIFAFPLNDNPKVNTITGEK
EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEECHHH
LKNVWGYNPVNFFSVTSNYRYGVKIGEEIIQFQDLVFELHKNGIEVILDVVFNHTAEGNE
HHHHCCCCCEEEEEEECCCEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
LGPTLNFRGLENSVYYLLKKDNPRYYENFSGTGNTINSSHYVVKQMILDSLRYWVSEMHV
CCCCCEEECCCCEEEEEEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
DGFRFDLASILGRDSKGNWIGDLSLLKDIADDPILAGTKLIAEGWDAAGGYYVGDFPTGW
CCHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEECCCCCCH
AEWNGKFRDTVRRFVKGDNGVVSDLATRIAGSPDLFEKRGRKPYNSVNFITSHDGFTMWD
HHCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCCCEEEE
LVSYNNKHNDANGENNRDGTDANYSFNYGVEGETNDENIIKLRKQQIKNFITILMVSQGL
EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PMILMGDEFCRTQFGNNNAYCQDNYISWVDWSRKVKFNDIFNFTKNMIHFRKVHCALRRD
CEEEECCHHHHHHCCCCCCEECCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHC
RFFTGRDLSGDGIADITWHGVKPFKPDFGYYSHSLAFMISGDDYIQGCKEKDSDIYVALN
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCEEEEHH
AFIKDLQFEIPKLQNGKKWYRVVDTSEESPNDFLLEPSIVKDNHYTVHSRSSIVLISK
HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEECCCEECCCCEEEECCCEEEEEEC
>Mature Secondary Structure
MEETKIKEKAQFKVSKGFPVLGTSIDRGGVNFGVFTRNGTSVTLEIYENYYDEEPAFKYV
CCCCCCCHHHHEEECCCCCEEECCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCHHE
LDKKENRTGNIWHVFVEQARAGMSYGWRIDGPYNPEEGFRFNKNKLLLDPYAKVIGGSLD
ECCCCCCCCCEEEEEEHHHHCCCCCCEEECCCCCCCCCCEECCCEEEECCHHHHHCCCCC
FSEESIFGYDKNDPKKDLSFSTLDSAKSQVKSFIWDSRGYNWKNDENPRHPLNDMIIYEL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE
HVRLYTINPNSNVEHRGTYKGIAEKINYLKGLGVNAVELMPIFAFPLNDNPKVNTITGEK
EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEECHHH
LKNVWGYNPVNFFSVTSNYRYGVKIGEEIIQFQDLVFELHKNGIEVILDVVFNHTAEGNE
HHHHCCCCCEEEEEEECCCEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
LGPTLNFRGLENSVYYLLKKDNPRYYENFSGTGNTINSSHYVVKQMILDSLRYWVSEMHV
CCCCCEEECCCCEEEEEEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
DGFRFDLASILGRDSKGNWIGDLSLLKDIADDPILAGTKLIAEGWDAAGGYYVGDFPTGW
CCHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEECCCCCCH
AEWNGKFRDTVRRFVKGDNGVVSDLATRIAGSPDLFEKRGRKPYNSVNFITSHDGFTMWD
HHCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCCCEEEE
LVSYNNKHNDANGENNRDGTDANYSFNYGVEGETNDENIIKLRKQQIKNFITILMVSQGL
EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PMILMGDEFCRTQFGNNNAYCQDNYISWVDWSRKVKFNDIFNFTKNMIHFRKVHCALRRD
CEEEECCHHHHHHCCCCCCEECCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHC
RFFTGRDLSGDGIADITWHGVKPFKPDFGYYSHSLAFMISGDDYIQGCKEKDSDIYVALN
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCEEEEHH
AFIKDLQFEIPKLQNGKKWYRVVDTSEESPNDFLLEPSIVKDNHYTVHSRSSIVLISK
HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEECCCEECCCCEEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Glycosylases; Glycosidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]