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The map label for this gene is gcdB [H]

Identifier: 160903102

GI number: 160903102

Start: 1824560

End: 1825696

Strand: Direct

Name: gcdB [H]

Synonym: Pmob_1666

Alternate gene names: 160903102

Gene position: 1824560-1825696 (Clockwise)

Preceding gene: 160903099

Following gene: 160903103

Centisome position: 84.1

GC content: 37.2

Gene sequence:

>1137_bases
ATGCTAGCGGAAGGCATACTCGACTTTTTTTCAAGTACTGGATTTATCAATCTTTCTTGGCCTCAAGTTTTCATGATACT
TCTTGGATTGATTATTATCTATTTTGCTATATCAAAACACGCAGAACCGCTTCTTTTAATTCCATTGGGCTTTGGTATGG
TTATAGCTAACATTCCCCCAGAATTAACAGGTATTCTCATGCCTCCTCAGAATGGCCAACCAGGCGGATTGTTGTGGTAT
ATAAAATTGGGATTAGATACTGGAATCTATCCACCATTGATTTTTTTGGGTATTGGAGCATTAACTGATTTTTCTTACTT
GATTGCTAATCCAAAATTGATACTCCTGGGGGGAGCTGCTCAGGTAGGCATTTTTATTAGTTTTATATTGGCGAGTTTTT
TAGGGTTTGACCTTCATCCTGCAGCCGCGATAGGTCTTATTGGAGGTGCTGATGGTCCAACTTCTATCTACATAGCTTCT
AAATTTTCTCCGGATTTATTACCTGTTATAGCAGTTGCAGCCTATTCTTATATTTCACTTATTCCTGTGCTTCAACCTTT
TGTTTCAAAGTTACTTACCTCCAAAAGAGAAAGAAAAATACGTATGAGAAGGTTAAGGGAAGTTTCTAAAAAAGAAAGAA
TTATTTTTCCTATAATAACAACTGTTGTAGTTTCTTTAATGGTTCCCCAGGCTCTACCTTTAGTAGGAATGCTTATGTTG
GGAAACTTGTTAAAAGAATCTGGAGTAACTGGTAGATTAGCTGAAGCGGCCTCACGTTATGTTTTGGATACAGTGACAAT
ACTTTTAATGCTATCGGTAGGAGTTTCTGCCACGGCTGATATATTTTTATCTTGGATAGCCTTAAAAATTATATTGTTAG
GGGCAGTTGCATTTATAATTGCATTGGCAAGTGGAATAGGATTTGCAAAATTGATGAATTTGTTTGCAAAAGAAAAAATT
AATCCATTGATTGGTGCAGCAGGTGTTTCGGCGGTACCTGATTCAGCTCGTGTAGCCCAACATATTGCTCAAGAGACTGA
TCCAGGTAATTTTATTTTAATGCATGCAATGGGGCCAAATGTTGCCGGAGTAATAGGTTCGGCAATAGCTGCTGGTCTAT
TTTTAAGTATACTATAA

Upstream 100 bases:

>100_bases
TTTTATATAAAGTAGAAACAGTAAATTTTTTTATGTTATAATAAAATACTGTAGAAGTGATTGAAAAAAATTTCACACTT
ATCTCCTAGGAGGTTTTTAA

Downstream 100 bases:

>100_bases
TATAGACATTTTGATAAAAAAAGGGTTATCAAACAAATGGGAGGAATAATCAAATGCAAACTACTAAAAAACATTTTAAA
GTGATAATTAATTACAATTA

Product: sodium ion-translocating decarboxylase subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MLAEGILDFFSSTGFINLSWPQVFMILLGLIIIYFAISKHAEPLLLIPLGFGMVIANIPPELTGILMPPQNGQPGGLLWY
IKLGLDTGIYPPLIFLGIGALTDFSYLIANPKLILLGGAAQVGIFISFILASFLGFDLHPAAAIGLIGGADGPTSIYIAS
KFSPDLLPVIAVAAYSYISLIPVLQPFVSKLLTSKRERKIRMRRLREVSKKERIIFPIITTVVVSLMVPQALPLVGMLML
GNLLKESGVTGRLAEAASRYVLDTVTILLMLSVGVSATADIFLSWIALKIILLGAVAFIIALASGIGFAKLMNLFAKEKI
NPLIGAAGVSAVPDSARVAQHIAQETDPGNFILMHAMGPNVAGVIGSAIAAGLFLSIL

Sequences:

>Translated_378_residues
MLAEGILDFFSSTGFINLSWPQVFMILLGLIIIYFAISKHAEPLLLIPLGFGMVIANIPPELTGILMPPQNGQPGGLLWY
IKLGLDTGIYPPLIFLGIGALTDFSYLIANPKLILLGGAAQVGIFISFILASFLGFDLHPAAAIGLIGGADGPTSIYIAS
KFSPDLLPVIAVAAYSYISLIPVLQPFVSKLLTSKRERKIRMRRLREVSKKERIIFPIITTVVVSLMVPQALPLVGMLML
GNLLKESGVTGRLAEAASRYVLDTVTILLMLSVGVSATADIFLSWIALKIILLGAVAFIIALASGIGFAKLMNLFAKEKI
NPLIGAAGVSAVPDSARVAQHIAQETDPGNFILMHAMGPNVAGVIGSAIAAGLFLSIL
>Mature_378_residues
MLAEGILDFFSSTGFINLSWPQVFMILLGLIIIYFAISKHAEPLLLIPLGFGMVIANIPPELTGILMPPQNGQPGGLLWY
IKLGLDTGIYPPLIFLGIGALTDFSYLIANPKLILLGGAAQVGIFISFILASFLGFDLHPAAAIGLIGGADGPTSIYIAS
KFSPDLLPVIAVAAYSYISLIPVLQPFVSKLLTSKRERKIRMRRLREVSKKERIIFPIITTVVVSLMVPQALPLVGMLML
GNLLKESGVTGRLAEAASRYVLDTVTILLMLSVGVSATADIFLSWIALKIILLGAVAFIIALASGIGFAKLMNLFAKEKI
NPLIGAAGVSAVPDSARVAQHIAQETDPGNFILMHAMGPNVAGVIGSAIAAGLFLSIL

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 40085; Mature: 40085

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAEGILDFFSSTGFINLSWPQVFMILLGLIIIYFAISKHAEPLLLIPLGFGMVIANIPP
CCHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCC
ELTGILMPPQNGQPGGLLWYIKLGLDTGIYPPLIFLGIGALTDFSYLIANPKLILLGGAA
HHCEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCH
QVGIFISFILASFLGFDLHPAAAIGLIGGADGPTSIYIASKFSPDLLPVIAVAAYSYISL
HHHHHHHHHHHHHHCCCCCCHHHHEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
IPVLQPFVSKLLTSKRERKIRMRRLREVSKKERIIFPIITTVVVSLMVPQALPLVGMLML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GNLLKESGVTGRLAEAASRYVLDTVTILLMLSVGVSATADIFLSWIALKIILLGAVAFII
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALASGIGFAKLMNLFAKEKINPLIGAAGVSAVPDSARVAQHIAQETDPGNFILMHAMGPN
HHHHCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC
VAGVIGSAIAAGLFLSIL
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLAEGILDFFSSTGFINLSWPQVFMILLGLIIIYFAISKHAEPLLLIPLGFGMVIANIPP
CCHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCC
ELTGILMPPQNGQPGGLLWYIKLGLDTGIYPPLIFLGIGALTDFSYLIANPKLILLGGAA
HHCEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCH
QVGIFISFILASFLGFDLHPAAAIGLIGGADGPTSIYIASKFSPDLLPVIAVAAYSYISL
HHHHHHHHHHHHHHCCCCCCHHHHEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
IPVLQPFVSKLLTSKRERKIRMRRLREVSKKERIIFPIITTVVVSLMVPQALPLVGMLML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GNLLKESGVTGRLAEAASRYVLDTVTILLMLSVGVSATADIFLSWIALKIILLGAVAFII
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALASGIGFAKLMNLFAKEKINPLIGAAGVSAVPDSARVAQHIAQETDPGNFILMHAMGPN
HHHHCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC
VAGVIGSAIAAGLFLSIL
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]