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The map label for this gene is omp-alpha [H]

Identifier: 160903060

GI number: 160903060

Start: 1778583

End: 1779575

Strand: Direct

Name: omp-alpha [H]

Synonym: Pmob_1624

Alternate gene names: 160903060

Gene position: 1778583-1779575 (Clockwise)

Preceding gene: 160903059

Following gene: 160903065

Centisome position: 81.98

GC content: 36.46

Gene sequence:

>993_bases
GTGAAAAAGGCAGGTATTTTGTTTTTATTTTTGTTTTTGGCTTTAGGAGTATTTTCACAGTCTTTTAAGGATGTTCCCAT
CAATCATTGGGCATATGATGCAGTTGAAAGGCTTTCTGGTATTGGCATTATTGAAGGATACCCCGATGGTACTTTTAAAG
GATTAGAAAACATGAACAGGTATCAACTGACTGTTGCTTTGTCCAGAACGATTGATTACGTAGAACAAAGTATGATTGAG
CCTTTAGCCCAAAATTTGGCGAATTTGGAAAGGACTGTAAGTAGTTTATCTGTTCCGCAAGGAGTTTCTTCAGCGGAATT
ACAGCAACTTCAAACAAAATTAAACTCTCTTACAAGTGATCTTTCTACTCTTCAGGGTTCCGTTTCGAGGTTGGATAGTT
CTGTCAAGGAACTTCAGAATTCTTATGAGTTGCTTGGTTATGCCACCACGAAGATAGACGAATTAGAGAGAAAGGTCAAC
GCCATATCAGTGCCCGCGGTAAGCGAAACTGACATCAGAAACTTAAATACCAGAGTTACCAATCTGGAAAACACCGTTGG
AAGTCTGAATAGTAATTATCAGAATCTTTCTCAAACAGTATCTAATTCCAATCAAGAAATACAGTCGTTAAAAAATTCAG
TAGCTAGTATTCAAAACTCTTTTTCTAGTGTAAACCAAGATTTGGACAGATTGAATGCTTTAACGGCTAACTTGAATTCG
AAGATAGATTCTAAAGTTGATAAAACTGAGTTTACTTCGTTAAAAAACACTACTGACGAATTAAGTGTTCAATTAAGTAA
TAATACCCAATCTGTTTCTGAATTGTCCCAAAACTTACAAGCCGTTCAAAGTAGTGTTGATCAGCTCTCTCAAGAGGTCA
CTGATGTAAAACAAATAGCTGAAGGTGCCGGTGGAGGAGTAAACTTCTTAGATATCATTATCTCAGTGGTAATTTCTGCA
GGTTTATCCTTTGCTATAATGAACTTGCTATAA

Upstream 100 bases:

>100_bases
TTCTCCTCGTTAGAGTTGAGTAGTTCACCACTTTTTGTGATAAAATAAAATCGATAGCAGTAAAAAAACTTAAAATACTA
AAATTCAGGAGGTGTGTGTA

Downstream 100 bases:

>100_bases
AAAAATATCGCTGGTTTTTTCGACCAGCGATATTTTTATTTAATGTTCCTTTTTAAGACTATAATTTCTAATTTATCAGA
AGCATCTTCGGCCCTGTCTG

Product: S-layer domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKKAGILFLFLFLALGVFSQSFKDVPINHWAYDAVERLSGIGIIEGYPDGTFKGLENMNRYQLTVALSRTIDYVEQSMIE
PLAQNLANLERTVSSLSVPQGVSSAELQQLQTKLNSLTSDLSTLQGSVSRLDSSVKELQNSYELLGYATTKIDELERKVN
AISVPAVSETDIRNLNTRVTNLENTVGSLNSNYQNLSQTVSNSNQEIQSLKNSVASIQNSFSSVNQDLDRLNALTANLNS
KIDSKVDKTEFTSLKNTTDELSVQLSNNTQSVSELSQNLQAVQSSVDQLSQEVTDVKQIAEGAGGGVNFLDIIISVVISA
GLSFAIMNLL

Sequences:

>Translated_330_residues
MKKAGILFLFLFLALGVFSQSFKDVPINHWAYDAVERLSGIGIIEGYPDGTFKGLENMNRYQLTVALSRTIDYVEQSMIE
PLAQNLANLERTVSSLSVPQGVSSAELQQLQTKLNSLTSDLSTLQGSVSRLDSSVKELQNSYELLGYATTKIDELERKVN
AISVPAVSETDIRNLNTRVTNLENTVGSLNSNYQNLSQTVSNSNQEIQSLKNSVASIQNSFSSVNQDLDRLNALTANLNS
KIDSKVDKTEFTSLKNTTDELSVQLSNNTQSVSELSQNLQAVQSSVDQLSQEVTDVKQIAEGAGGGVNFLDIIISVVISA
GLSFAIMNLL
>Mature_330_residues
MKKAGILFLFLFLALGVFSQSFKDVPINHWAYDAVERLSGIGIIEGYPDGTFKGLENMNRYQLTVALSRTIDYVEQSMIE
PLAQNLANLERTVSSLSVPQGVSSAELQQLQTKLNSLTSDLSTLQGSVSRLDSSVKELQNSYELLGYATTKIDELERKVN
AISVPAVSETDIRNLNTRVTNLENTVGSLNSNYQNLSQTVSNSNQEIQSLKNSVASIQNSFSSVNQDLDRLNALTANLNS
KIDSKVDKTEFTSLKNTTDELSVQLSNNTQSVSELSQNLQAVQSSVDQLSQEVTDVKQIAEGAGGGVNFLDIIISVVISA
GLSFAIMNLL

Specific function: Links the outer membrane to the inner membrane. Long fibrous protein that could serve to separate the two membranes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SLH (S-layer homology) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001119 [H]

Pfam domain/function: PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 35942; Mature: 35942

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAGILFLFLFLALGVFSQSFKDVPINHWAYDAVERLSGIGIIEGYPDGTFKGLENMNR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCH
YQLTVALSRTIDYVEQSMIEPLAQNLANLERTVSSLSVPQGVSSAELQQLQTKLNSLTSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LSTLQGSVSRLDSSVKELQNSYELLGYATTKIDELERKVNAISVPAVSETDIRNLNTRVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
NLENTVGSLNSNYQNLSQTVSNSNQEIQSLKNSVASIQNSFSSVNQDLDRLNALTANLNS
HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIDSKVDKTEFTSLKNTTDELSVQLSNNTQSVSELSQNLQAVQSSVDQLSQEVTDVKQIA
HHHHHHHHHHHHHHHCCHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGAGGGVNFLDIIISVVISAGLSFAIMNLL
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKKAGILFLFLFLALGVFSQSFKDVPINHWAYDAVERLSGIGIIEGYPDGTFKGLENMNR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCH
YQLTVALSRTIDYVEQSMIEPLAQNLANLERTVSSLSVPQGVSSAELQQLQTKLNSLTSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LSTLQGSVSRLDSSVKELQNSYELLGYATTKIDELERKVNAISVPAVSETDIRNLNTRVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
NLENTVGSLNSNYQNLSQTVSNSNQEIQSLKNSVASIQNSFSSVNQDLDRLNALTANLNS
HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIDSKVDKTEFTSLKNTTDELSVQLSNNTQSVSELSQNLQAVQSSVDQLSQEVTDVKQIA
HHHHHHHHHHHHHHHCCHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGAGGGVNFLDIIISVVISAGLSFAIMNLL
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1330536; 10360571 [H]